mmagnus/do-science-covid-faq

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mmagnus/do-science-covid-faq

mmagnus

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rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

Jupyter Notebook

emacs-grammarly

an Emacs extension to send a text to/from Grammarly

geekbook

G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-based notes

pubmex

get full paper names for downloaded publications automatically

EvoClustRNA

RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io

Jupyter Notebook

emacs-pdb-mode

pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.

RNA-Structural-Bioinformatics-Crash-Course

RNA Structural Bioinformatics Crash Course & Data Science in Python

RNA-Puzzles-Standardized-Submissions

Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip

EmacsOrgModeClockingXBar

see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives

garmin2orgmode

garmin2orgmode - Send your Garmin activities to OrgMode (on macOS)

awesome-rna-3D-tools

awesome tools for RNA

emacs-env

I've been using Emacs for over 16 (since 2007) years now. This's my config file :-) it might be useful for someone. http://mmagnus.github.io/emacs-env/

boox-wifi-mount-sync

boox-wifi-mount-sync - sync or mount your Boox device over WiFi

yeast-spotifier

spotifier - a script to process yeast plate images into figures, without fancy Deep Learning ;-) (yet)

OrgModeClocking2Calendar

one way synchronization of your clocking (time tracking) entries from OrgMode Emacs

PyMOL4Spliceosome

Structures of the spliceosome processed to be easily viewed with PyMOL

h2o_utils

🔧 H2o utils: save/load models to your H2O session

Jupyter Notebook

borg-search

Tools search borg archives/repos (also to search big files to remove them)

Xfind

🔎 a command tool for searching on your eXternal machines (VM etc) and drives

emacs-toggl

a simple plugin to work with toggl

mmfinder

scanify

Scanify (and resize if needed) your pictures/screenshots

Jupyter Notebook

PocketX-Calibre-Plugin

PocketX-Calibre-Plugin is an experimental version of Pocket-Plus-Calibre-Plugin (send articles from Pocket to your e-reader)

samochodoza

diffpdb

diffpdb - a simple tool to compare text-content of PDB files

geekbook-export

rna-tools-webserver-engine

The light-weight, complete webserver engine used by me for servers: RNA/DNA-protein docking method http://genesilico.pl/NPDock, RNA 3D structure prediction method http://iimcb.genesilico.pl/SimRNAweb/, RNA 3D quality control, http://iimcb.genesilico.pl/mqapRNA/, building RNA models from recurrent 3D motifs http://genesilico.pl/rnamasonry

garmin2calendar

garmin2calendar - Send your Garmin activities to Calendar (on macOS)