Marcin Magnus (@mmagnus)

Top repositories

1

rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
Jupyter Notebook
147
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2

emacs-grammarly

an Emacs extension to send a text to/from Grammarly
Emacs Lisp
114
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3

geekbook

G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-based notes
Python
41
star
4

pubmex

get full paper names for downloaded publications automatically
Python
19
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5

EvoClustRNA

RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
Jupyter Notebook
13
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6

emacs-pdb-mode

pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
Emacs Lisp
13
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7

RNA-Structural-Bioinformatics-Crash-Course

RNA Structural Bioinformatics Crash Course & Data Science in Python
11
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8

RNA-Puzzles-Standardized-Submissions

Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip
Shell
9
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9

EmacsOrgModeClockingXBar

see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives
Python
9
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10

garmin2orgmode

garmin2orgmode - Send your Garmin activities to OrgMode (on macOS)
Python
8
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11

awesome-rna-3D-tools

awesome tools for RNA
7
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12

emacs-env

I've been using Emacs for over 16 (since 2007) years now. This's my config file :-) it might be useful for someone. http://mmagnus.github.io/emacs-env/
Python
6
star
13

boox-wifi-mount-sync

boox-wifi-mount-sync - sync or mount your Boox device over WiFi
Python
4
star
14

yeast-spotifier

spotifier - a script to process yeast plate images into figures, without fancy Deep Learning ;-) (yet)
Python
4
star
15

OrgModeClocking2Calendar

one way synchronization of your clocking (time tracking) entries from OrgMode Emacs
Python
4
star
16

PyMOL4Spliceosome

Structures of the spliceosome processed to be easily viewed with PyMOL
4
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17

h2o_utils

🔧 H2o utils: save/load models to your H2O session
Jupyter Notebook
3
star
18

do-science-covid-faq

3
star
19

borg-search

Tools search borg archives/repos (also to search big files to remove them)
Python
3
star
20

Xfind

🔎 a command tool for searching on your eXternal machines (VM etc) and drives
Python
2
star
21

emacs-toggl

a simple plugin to work with toggl
Emacs Lisp
2
star
22

mmfinder

mmfinder
Python
2
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23

scanify

Scanify (and resize if needed) your pictures/screenshots
Jupyter Notebook
2
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24

PocketX-Calibre-Plugin

PocketX-Calibre-Plugin is an experimental version of Pocket-Plus-Calibre-Plugin (send articles from Pocket to your e-reader)
Python
2
star
25

samochodoza

1
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26

diffpdb

diffpdb - a simple tool to compare text-content of PDB files
Python
1
star
27

geekbook-export

1
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28

rna-tools-webserver-engine

The light-weight, complete webserver engine used by me for servers: RNA/DNA-protein docking method http://genesilico.pl/NPDock, RNA 3D structure prediction method http://iimcb.genesilico.pl/SimRNAweb/, RNA 3D quality control, http://iimcb.genesilico.pl/mqapRNA/, building RNA models from recurrent 3D motifs http://genesilico.pl/rnamasonry
JavaScript
1
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29

garmin2calendar

garmin2calendar - Send your Garmin activities to Calendar (on macOS)
Python
1
star