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rna-tools
π§rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.onlineemacs-grammarly
an Emacs extension to send a text to/from Grammarlygeekbook
G33KB00K3 - fun to read & fun to write -- π€ eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-based notespubmex
get full paper names for downloaded publications automaticallyEvoClustRNA
RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.ioemacs-pdb-mode
pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.RNA-Structural-Bioinformatics-Crash-Course
RNA Structural Bioinformatics Crash Course & Data Science in PythonRNA-Puzzles-Standardized-Submissions
Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zipEmacsOrgModeClockingXBar
see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternativesgarmin2orgmode
garmin2orgmode - Send your Garmin activities to OrgMode (on macOS)awesome-rna-3D-tools
awesome tools for RNAemacs-env
I've been using Emacs for over 16 (since 2007) years now. This's my config file :-) it might be useful for someone. http://mmagnus.github.io/emacs-env/boox-wifi-mount-sync
boox-wifi-mount-sync - sync or mount your Boox device over WiFiyeast-spotifier
spotifier - a script to process yeast plate images into figures, without fancy Deep Learning ;-) (yet)OrgModeClocking2Calendar
one way synchronization of your clocking (time tracking) entries from OrgMode EmacsPyMOL4Spliceosome
Structures of the spliceosome processed to be easily viewed with PyMOLh2o_utils
π§ H2o utils: save/load models to your H2O sessiondo-science-covid-faq
borg-search
Tools search borg archives/repos (also to search big files to remove them)Xfind
π a command tool for searching on your eXternal machines (VM etc) and drivesemacs-toggl
a simple plugin to work with togglmmfinder
mmfinderscanify
Scanify (and resize if needed) your pictures/screenshotssamochodoza
diffpdb
diffpdb - a simple tool to compare text-content of PDB filesgeekbook-export
rna-tools-webserver-engine
The light-weight, complete webserver engine used by me for servers: RNA/DNA-protein docking method http://genesilico.pl/NPDock, RNA 3D structure prediction method http://iimcb.genesilico.pl/SimRNAweb/, RNA 3D quality control, http://iimcb.genesilico.pl/mqapRNA/, building RNA models from recurrent 3D motifs http://genesilico.pl/rnamasonrygarmin2calendar
garmin2calendar - Send your Garmin activities to Calendar (on macOS)Love Open Source and this site? Check out how you can help us