lucapinello/CRISPR-meets-Docker

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Created about 8 years ago
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lucapinello/CRISPR-meets-Docker

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Docker images and IPython notebooks (bash kernel) for common CRISPR bioinformatic analysis: CRISPOR, CRISPResso and MAGeCK

CRISPResso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

pyacaia

Python module to interact with Acaia scales via Bluetooth (BLE)

Haystack

Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

bsub_jupyter

Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The name of the connection can be used to reestablish the connection later or to terminate it.

pydecentscale

Python module to interact with the Decent Scale scales (https://decentespresso.com/scale) via Bluetooth (BLE).

SR700_Artisan_Server

Extended version of the SR700-Artisan-PDServer for Phidget

bioutilities

Python library to streamline the analysis of genomics data

beans_autodoser_acaia

Jupyter Notebook

mim

Motif Independent Metric

pydecora_ble

Python module to interact with Leviton dimmers (for example this one:https://www.leviton.com/en/products/ddl06-blz) via Bluetooth (BLE).

test_nat_prot

smartfoamer

SR700_Artisan_Profile_Builder

Create artisan profiles using the alarms and the modified version of the freshroastsr700 library for phidget