jrderuiter/snakemake-pdx-exome

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1
Language
Python
License
MIT License
Created over 7 years ago
Updated over 5 years ago

jrderuiter/snakemake-pdx-exome

jrderuiter

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Snakemake workflow for processing pdx exome data.

pybiomart

A simple pythonic interface to biomart.

snakemake-rnaseq

RNA-seq workflow for Snakemake based on STAR and featureCounts.

airflow-fs

Composable filesystem hooks and operators for Apache Airflow.

geneviz

Library for visualising genomic features in Python.

randomforest-matlab

Fork of randomforest-matlab project by Abhishek Jaiantilal.

snakemake-exome

Snakemake workflow for processing exome data.

snakemake-cnvseq

Snakemake workflow for processing CNV-seq data.

production-ready-ml

dacite-config

Helpers for creating typed, IDE-friendly configs in Python using dataclasses and `dacite`.

code-breakfast-vertex-ai

Code breakfast focusing on Vertex AI.

Jupyter Notebook

multiscale_segmentation

heos

Python library for interacting with HEOS multi-room speakers.

code-breakfast-productionizing

Jupyter Notebook

imfusion-analyses

Jupyter notebooks and code accompanying our paper "Identifying transposon insertions and their effects from RNA-sequencing data" in Nucleic Acids Research (2017, in press).

Jupyter Notebook

randomforest-wrapper-matlab

jupyterlab-vscode

Docker image with JupyterLab + VSCode Server for browser-based editing.

genemap

Python library + command line tool for mapping gene ids between different types and species.

openvscode-python

Small example of a Docker container that clones a Python repo and exposes it in openvscode-server.