Discover jrderuiter/imfusion-analyses Open Source project

Stars
2
Language
Jupyter Notebook
License
MIT License
Created about 8 years ago
Updated over 7 years ago

jrderuiter

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Jupyter notebooks and code accompanying our paper "Identifying transposon insertions and their effects from RNA-sequencing data" in Nucleic Acids Research (2017, in press).

pybiomart

A simple pythonic interface to biomart.

Python

snakemake-rnaseq

RNA-seq workflow for Snakemake based on STAR and featureCounts.

Python

airflow-fs

Composable filesystem hooks and operators for Apache Airflow.

Python

geneviz

Library for visualising genomic features in Python.

Python

randomforest-matlab

Fork of randomforest-matlab project by Abhishek Jaiantilal.

C++

snakemake-exome

Snakemake workflow for processing exome data.

Python

snakemake-cnvseq

Snakemake workflow for processing CNV-seq data.

Python

production-ready-ml

Python

dacite-config

Helpers for creating typed, IDE-friendly configs in Python using dataclasses and `dacite`.

Python

code-breakfast-vertex-ai

Code breakfast focusing on Vertex AI.

Jupyter Notebook

multiscale_segmentation

Python

heos

Python library for interacting with HEOS multi-room speakers.

Python

code-breakfast-productionizing

Jupyter Notebook

randomforest-wrapper-matlab

snakemake-pdx-exome

Snakemake workflow for processing pdx exome data.

Python

jupyterlab-vscode

Docker image with JupyterLab + VSCode Server for browser-based editing.

Dockerfile

genemap

Python library + command line tool for mapping gene ids between different types and species.

Python

openvscode-python

Small example of a Docker container that clones a Python repo and exposes it in openvscode-server.

Dockerfile

jrderuiter/imfusion-analyses

jrderuiter

Reviews

Repository Details

More Repositories