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pybiomart
A simple pythonic interface to biomart.snakemake-rnaseq
RNA-seq workflow for Snakemake based on STAR and featureCounts.airflow-fs
Composable filesystem hooks and operators for Apache Airflow.geneviz
Library for visualising genomic features in Python.randomforest-matlab
Fork of randomforest-matlab project by Abhishek Jaiantilal.snakemake-exome
Snakemake workflow for processing exome data.snakemake-cnvseq
Snakemake workflow for processing CNV-seq data.production-ready-ml
dacite-config
Helpers for creating typed, IDE-friendly configs in Python using dataclasses and `dacite`.code-breakfast-vertex-ai
Code breakfast focusing on Vertex AI.multiscale_segmentation
code-breakfast-productionizing
imfusion-analyses
Jupyter notebooks and code accompanying our paper "Identifying transposon insertions and their effects from RNA-sequencing data" in Nucleic Acids Research (2017, in press).randomforest-wrapper-matlab
snakemake-pdx-exome
Snakemake workflow for processing pdx exome data.jupyterlab-vscode
Docker image with JupyterLab + VSCode Server for browser-based editing.genemap
Python library + command line tool for mapping gene ids between different types and species.openvscode-python
Small example of a Docker container that clones a Python repo and exposes it in openvscode-server.Love Open Source and this site? Check out how you can help us