institut-de-genomique/orthodotter

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Created over 7 years ago
Updated over 7 years ago

institut-de-genomique/orthodotter

institut-de-genomique

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Synteny plots (oxford grid)

Ultimate-DataTable

This AngularJS directive generate a HTML table with build-in fonctionnality like save, edit, remove, pagination etc...

Gmove

Gmove is a gene prediction tool

HAPO-G

Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.

NaS

NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.

hibernatetools-gradle-plugin

Hibernate tools plugin to reverse engineering database from gradle

BoardION

biscot

Bionano SCaffolding Correction Tool

Pahang-associated-data

This repository contains all the scripts used to produce the paper's figures

fastxtend

A package to perform NGS quality control

MaGuS

MaGuS (Map-Guided Scaffolding) is a map-guided scaffolder and a reference-free assembly quality evaluator.

obo-parser

A java parser for obo file format as provided by unipathway

saturn

A tool for assessing the library saturation without alignment

LocoGSE

A tool to estimate the genome size

Kfir

TaraPacific_Pocillopora-transcriptomic

Transcriptomic plasticity and symbiont shift underpin Pocillopora acclimatization across heat-stress regimes in the Pacific Ocean

bamFilters

A tool to filter BAM files