Discover institut-de-genomique/HAPO-G Open Source project

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Created almost 5 years ago
Updated 8 months ago

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Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.

Ultimate-DataTable

This AngularJS directive generate a HTML table with build-in fonctionnality like save, edit, remove, pagination etc...

JavaScript

Gmove

Gmove is a gene prediction tool

C++

NaS

NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.

Perl

hibernatetools-gradle-plugin

Hibernate tools plugin to reverse engineering database from gradle

Groovy

BoardION

C++

biscot

Bionano SCaffolding Correction Tool

Python

Pahang-associated-data

This repository contains all the scripts used to produce the paper's figures

Python

fastxtend

A package to perform NGS quality control

C++

MaGuS

MaGuS (Map-Guided Scaffolding) is a map-guided scaffolder and a reference-free assembly quality evaluator.

Perl

obo-parser

A java parser for obo file format as provided by unipathway

Java

orthodotter

Synteny plots (oxford grid)

Perl

saturn

A tool for assessing the library saturation without alignment

C++

LocoGSE

A tool to estimate the genome size

Python

Kfir

C++

TaraPacific_Pocillopora-transcriptomic

Transcriptomic plasticity and symbiont shift underpin Pocillopora acclimatization across heat-stress regimes in the Pacific Ocean

bamFilters

A tool to filter BAM files

institut-de-genomique/HAPO-G

institut-de-genomique

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