bahlolab/pf_variant_calling_pipeline

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Groovy
Created almost 9 years ago
Updated about 8 years ago

bahlolab/pf_variant_calling_pipeline

bahlolab

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A bpipe pipeline for processing WGS from Plasmodium facliparum

bioinfotools

Documenting usage and experience with bioinformatic tools

exSTRa

Expanded STR algorithm for Illumina sequencing data

superSTR

A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.

Genes4Epilepsy

A curated list of monogenic epilepsy genes

isoRelate

Performs pairwise identity by descent analysis on haploid recombining organisms in the presence of multiclonal infections using SNP genotype data

Bio-STR-exSTRa

Prepare BAM/CRAM for exSTRa R package

moimix

R package for inferring multiple infections from high-throughput sequencing data

cluster_benchmark_data

RepeatExpansionDatabase

linkdatagen

brain_scRNAed

RNA editing in single brain cells

mitoCN

Estimate mitochondrial DNA copy number from whole genome sequencing data

ggwehi

Colour scales for ggplot2 based on the WEHI colour palette

XIBD

An R package to perform relatedness mapping between pairs of individuals from SNP data

cavalier

cavalier: Candidate Variant List Evaluation Report

PlasmoSTR

PLASTER

Nextflow pipeline for long amplicon typing of PacBio SMRT sequencing data

ADAR-RADAR

Nextflow pipeline for detection, annotation and analysis of RNA editing

UKB.COVID19

UK Biobank COVID-19 data processing and risk factor association tests

AmpSeqR

Multi-locus Sequence Type Identificatino from Multiplexed Amplicon Deep Sequencing