bahlolab/mitoCN

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2
Language
R
License
MIT License
Created over 1 year ago
Updated 2 months ago

bahlolab/mitoCN

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Estimate mitochondrial DNA copy number from whole genome sequencing data

bioinfotools

Documenting usage and experience with bioinformatic tools

exSTRa

Expanded STR algorithm for Illumina sequencing data

superSTR

A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.

Genes4Epilepsy

A curated list of monogenic epilepsy genes

pf_variant_calling_pipeline

A bpipe pipeline for processing WGS from Plasmodium facliparum

isoRelate

Performs pairwise identity by descent analysis on haploid recombining organisms in the presence of multiclonal infections using SNP genotype data

Bio-STR-exSTRa

Prepare BAM/CRAM for exSTRa R package

moimix

R package for inferring multiple infections from high-throughput sequencing data

cluster_benchmark_data

RepeatExpansionDatabase

linkdatagen

brain_scRNAed

RNA editing in single brain cells

ggwehi

Colour scales for ggplot2 based on the WEHI colour palette

XIBD

An R package to perform relatedness mapping between pairs of individuals from SNP data

cavalier

cavalier: Candidate Variant List Evaluation Report

PlasmoSTR

PLASTER

Nextflow pipeline for long amplicon typing of PacBio SMRT sequencing data

ADAR-RADAR

Nextflow pipeline for detection, annotation and analysis of RNA editing

UKB.COVID19

UK Biobank COVID-19 data processing and risk factor association tests

AmpSeqR

Multi-locus Sequence Type Identificatino from Multiplexed Amplicon Deep Sequencing