bahlolab/bioinfotools bahlolab/bioinfotools

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bahlolab/bioinfotools
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bahlolab

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Repository Details

Documenting usage and experience with bioinformatic tools

More Repositories

1

exSTRa

Expanded STR algorithm for Illumina sequencing data
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2

superSTR

A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
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3

Genes4Epilepsy

A curated list of monogenic epilepsy genes
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4

pf_variant_calling_pipeline

A bpipe pipeline for processing WGS from Plasmodium facliparum
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5

isoRelate

Performs pairwise identity by descent analysis on haploid recombining organisms in the presence of multiclonal infections using SNP genotype data
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6

Bio-STR-exSTRa

Prepare BAM/CRAM for exSTRa R package
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7

moimix

R package for inferring multiple infections from high-throughput sequencing data
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8

cluster_benchmark_data

3
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9

RepeatExpansionDatabase

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10

linkdatagen

Perl
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11

brain_scRNAed

RNA editing in single brain cells
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12

mitoCN

Estimate mitochondrial DNA copy number from whole genome sequencing data
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13

ggwehi

Colour scales for ggplot2 based on the WEHI colour palette
R
2
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14

XIBD

An R package to perform relatedness mapping between pairs of individuals from SNP data
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15

cavalier

cavalier: Candidate Variant List Evaluation Report
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2
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16

PlasmoSTR

R
1
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17

PLASTER

Nextflow pipeline for long amplicon typing of PacBio SMRT sequencing data
R
1
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18

ADAR-RADAR

Nextflow pipeline for detection, annotation and analysis of RNA editing
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1
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19

UKB.COVID19

UK Biobank COVID-19 data processing and risk factor association tests
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20

AmpSeqR

Multi-locus Sequence Type Identificatino from Multiplexed Amplicon Deep Sequencing
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1
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