arq5x/ggd-recipes arq5x/ggd-recipes

  • Stars
    star
    6
  • Rank 2,539,965 (Top 51 %)
  • Language
  • Created almost 10 years ago
  • Updated almost 10 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
arq5x/ggd-recipes
github

arq5x

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Recipes for GGD

More Repositories

1

bedtools2

bedtools - the swiss army knife for genome arithmetic
C
910
star
2

gemini

a lightweight db framework for exploring genetic variation.
Python
316
star
3

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery
C
301
star
4

poretools

a toolkit for working with Oxford nanopore data
Jupyter Notebook
241
star
5

bedtools

A powerful toolset for genome arithmetic.
C++
140
star
6

grabix

a wee tool for random access into BGZF files.
C
83
star
7

bedtools-protocols

CSS
78
star
8

cyvcf

A fast Python library for VCF files leveraging Cython for speed.
Python
52
star
9

filo

Useful FILe and stream Operations
C++
44
star
10

ggd

Python
43
star
11

nanopore-scripts

Various scripts and recipes for working with nanopore data
Python
34
star
12

bedtools-python

A Python interface to the BEDTools API using Cython
C
28
star
13

kway-mergesort

A templated C++ API for memory-assisted, k-way merge sorts
C
25
star
14

piledriver

Basic, no assumptions, multi-pileup
C++
24
star
15

bits

BITS: Binary Interval Search
C++
23
star
16

Hydra

C++
19
star
17

chrom_sweep

Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.
Python
9
star
18

bash_completion

9
star
19

scurgen

A tool for detecting patterns in genomic data with space filling curves
Python
9
star
20

vitae

TeX
6
star
21

toy_bottle_bootstrap_app

A demonstration of using bottle with bootstrap for basic web app development
JavaScript
5
star
22

tutorials

CSS
4
star
23

hawk

header awk: awk with _named_ variables
Python
4
star
24

lab_website

quinlan lab website (quinlanlab.org)
HTML
4
star
25

codachrom

Chromosomal copy number tools.
Python
3
star
26

bedtools-galaxy

3
star
27

knotty

A comprehensive SV discovery suite.
C++
3
star
28

bits_paper

R
2
star
29

arq5x.github.io

HTML
1
star