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bedtools2
bedtools - the swiss army knife for genome arithmeticgemini
a lightweight db framework for exploring genetic variation.lumpy-sv
lumpy: a general probabilistic framework for structural variant discoveryporetools
a toolkit for working with Oxford nanopore databedtools
A powerful toolset for genome arithmetic.grabix
a wee tool for random access into BGZF files.cyvcf
A fast Python library for VCF files leveraging Cython for speed.filo
Useful FILe and stream Operationsggd
nanopore-scripts
Various scripts and recipes for working with nanopore databedtools-python
A Python interface to the BEDTools API using Cythonkway-mergesort
A templated C++ API for memory-assisted, k-way merge sortspiledriver
Basic, no assumptions, multi-pileupbits
BITS: Binary Interval SearchHydra
chrom_sweep
Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.bash_completion
scurgen
A tool for detecting patterns in genomic data with space filling curvesvitae
ggd-recipes
Recipes for GGDtoy_bottle_bootstrap_app
A demonstration of using bottle with bootstrap for basic web app developmenttutorials
hawk
header awk: awk with _named_ variableslab_website
quinlan lab website (quinlanlab.org)codachrom
Chromosomal copy number tools.bedtools-galaxy
knotty
A comprehensive SV discovery suite.bits_paper
arq5x.github.io
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