VCCRI/Sierra

Stars
48
Rank 594,835 (Top 12 %)
Language
R
License
GNU General Publi...
Created almost 5 years ago
Updated over 1 year ago

VCCRI/Sierra

VCCRI

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Discover differential transcript usage from polyA-captured single cell RNA-seq data

CIDR

Clustering through Imputation and Dimensionality Reduction

Falco

A quick and flexible single-cell RNA-seq processing framework on the cloud

SVPV

Structural Variant Prediction Viewer

Ularcirc

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

FlowGrid

Jupyter Notebook

VPOT

VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.

CardiacProfileR

CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers

XGSA

XGSA: a statistical method for cross-species gene set analysis

dv-trio

dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.

hactive

GEOracle

CIDR-examples

Examples relating to the CIDR package.

starmap

Immersive three dimensional visualisation of single cell data using smartphone-enabled virtual reality

scTalk

Intercellular communication analysis for scRNA-seq data

ConanVarvar

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole genome sequencing data

Scavenger

A pipeline for recovery of unaligned reads utilising similarity with aligned reads

PBrowse

A real-time collaborative genome browser

atlantool

Command line tool to index and search BAM files by QNAME

Spliceogen

GEOraclePlus

CIDR-comparisons

Cardiac-Image-Analysis

Images, macros and analysis pipelines for the quantitative analysis of cardiac parameters from microscopy images

SPAGI

Signalling Pathway Analysis for putative Gene regulatory network Identification

motif-discovery-pipeline

jointsv

scluster

Sparse supervised clustering

FibroblastIntegration

Code related to the integration analysis of cardiac fibroblasts

Jupyter Notebook

sSNVs

CAPS

C3

C3: An R package for cross-species compendium-based cell-type identification

SeqVis

PAD

PAD (Proximal and Distal) clustering