VCCRI/scluster VCCRI/scluster

  • Stars
    star
    2
  • Language
    R
  • Created about 7 years ago
  • Updated over 6 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
VCCRI/scluster
github

VCCRI

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Sparse supervised clustering

More Repositories

1

CIDR

Clustering through Imputation and Dimensionality Reduction
R
62
star
2

Sierra

Discover differential transcript usage from polyA-captured single cell RNA-seq data
R
48
star
3

Falco

A quick and flexible single-cell RNA-seq processing framework on the cloud
Python
38
star
4

SVPV

Structural Variant Prediction Viewer
Python
30
star
5

Ularcirc

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
R
15
star
6

FlowGrid

Jupyter Notebook
10
star
7

VPOT

VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.
Python
10
star
8

CardiacProfileR

CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers
R
10
star
9

XGSA

XGSA: a statistical method for cross-species gene set analysis
R
9
star
10

dv-trio

dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.
Shell
9
star
11

hactive

Swift
8
star
12

GEOracle

R
7
star
13

CIDR-examples

Examples relating to the CIDR package.
R
7
star
14

starmap

Immersive three dimensional visualisation of single cell data using smartphone-enabled virtual reality
JavaScript
7
star
15

scTalk

Intercellular communication analysis for scRNA-seq data
R
6
star
16

ConanVarvar

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole genome sequencing data
R
6
star
17

Scavenger

A pipeline for recovery of unaligned reads utilising similarity with aligned reads
Python
5
star
18

PBrowse

A real-time collaborative genome browser
JavaScript
5
star
19

atlantool

Command line tool to index and search BAM files by QNAME
Java
4
star
20

Spliceogen

Java
4
star
21

GEOraclePlus

Python
3
star
22

CIDR-comparisons

R
2
star
23

Cardiac-Image-Analysis

Images, macros and analysis pipelines for the quantitative analysis of cardiac parameters from microscopy images
ImageJ Macro
2
star
24

SPAGI

Signalling Pathway Analysis for putative Gene regulatory network Identification
R
2
star
25

motif-discovery-pipeline

R
2
star
26

jointsv

Python
2
star
27

FibroblastIntegration

Code related to the integration analysis of cardiac fibroblasts
Jupyter Notebook
2
star
28

sSNVs

Python
1
star
29

CAPS

Python
1
star
30

C3

C3: An R package for cross-species compendium-based cell-type identification
R
1
star
31

SeqVis

JavaScript
1
star
32

PAD

PAD (Proximal and Distal) clustering
JavaScript
1
star