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CIDR
Clustering through Imputation and Dimensionality ReductionSierra
Discover differential transcript usage from polyA-captured single cell RNA-seq dataFalco
A quick and flexible single-cell RNA-seq processing framework on the cloudSVPV
Structural Variant Prediction ViewerUlarcirc
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcriptsFlowGrid
VPOT
VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.CardiacProfileR
CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackersXGSA
XGSA: a statistical method for cross-species gene set analysisdv-trio
dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.hactive
GEOracle
CIDR-examples
Examples relating to the CIDR package.starmap
Immersive three dimensional visualisation of single cell data using smartphone-enabled virtual realityscTalk
Intercellular communication analysis for scRNA-seq dataConanVarvar
ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole genome sequencing dataScavenger
A pipeline for recovery of unaligned reads utilising similarity with aligned readsPBrowse
A real-time collaborative genome browseratlantool
Command line tool to index and search BAM files by QNAMESpliceogen
GEOraclePlus
CIDR-comparisons
Cardiac-Image-Analysis
Images, macros and analysis pipelines for the quantitative analysis of cardiac parameters from microscopy imagesSPAGI
Signalling Pathway Analysis for putative Gene regulatory network Identificationmotif-discovery-pipeline
jointsv
scluster
Sparse supervised clusteringsSNVs
CAPS
C3
C3: An R package for cross-species compendium-based cell-type identificationSeqVis
PAD
PAD (Proximal and Distal) clusteringLove Open Source and this site? Check out how you can help us