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CIDR
Clustering through Imputation and Dimensionality ReductionSierra
Discover differential transcript usage from polyA-captured single cell RNA-seq dataFalco
A quick and flexible single-cell RNA-seq processing framework on the cloudSVPV
Structural Variant Prediction ViewerUlarcirc
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcriptsFlowGrid
VPOT
VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.CardiacProfileR
CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackersXGSA
XGSA: a statistical method for cross-species gene set analysisdv-trio
dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.hactive
GEOracle
CIDR-examples
Examples relating to the CIDR package.starmap
Immersive three dimensional visualisation of single cell data using smartphone-enabled virtual realityscTalk
Intercellular communication analysis for scRNA-seq dataConanVarvar
ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole genome sequencing dataScavenger
A pipeline for recovery of unaligned reads utilising similarity with aligned readsPBrowse
A real-time collaborative genome browseratlantool
Command line tool to index and search BAM files by QNAMESpliceogen
GEOraclePlus
CIDR-comparisons
Cardiac-Image-Analysis
Images, macros and analysis pipelines for the quantitative analysis of cardiac parameters from microscopy imagesSPAGI
Signalling Pathway Analysis for putative Gene regulatory network Identificationmotif-discovery-pipeline
jointsv
scluster
Sparse supervised clusteringFibroblastIntegration
Code related to the integration analysis of cardiac fibroblastssSNVs
CAPS
SeqVis
PAD
PAD (Proximal and Distal) clusteringLove Open Source and this site? Check out how you can help us