VCCRI/motif-discovery-pipeline

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2
Language
R
License
BSD 3-Clause "New...
Created over 7 years ago
Updated over 6 years ago

VCCRI/motif-discovery-pipeline

VCCRI

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CIDR

Clustering through Imputation and Dimensionality Reduction

Sierra

Discover differential transcript usage from polyA-captured single cell RNA-seq data

Falco

A quick and flexible single-cell RNA-seq processing framework on the cloud

SVPV

Structural Variant Prediction Viewer

Ularcirc

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

FlowGrid

Jupyter Notebook

VPOT

VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.

CardiacProfileR

CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers

XGSA

XGSA: a statistical method for cross-species gene set analysis

dv-trio

dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.

hactive

GEOracle

CIDR-examples

Examples relating to the CIDR package.

starmap

Immersive three dimensional visualisation of single cell data using smartphone-enabled virtual reality

scTalk

Intercellular communication analysis for scRNA-seq data

ConanVarvar

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole genome sequencing data

Scavenger

A pipeline for recovery of unaligned reads utilising similarity with aligned reads

PBrowse

A real-time collaborative genome browser

atlantool

Command line tool to index and search BAM files by QNAME

Spliceogen

GEOraclePlus

CIDR-comparisons

Cardiac-Image-Analysis

Images, macros and analysis pipelines for the quantitative analysis of cardiac parameters from microscopy images

SPAGI

Signalling Pathway Analysis for putative Gene regulatory network Identification

jointsv

scluster

Sparse supervised clustering

FibroblastIntegration

Code related to the integration analysis of cardiac fibroblasts

Jupyter Notebook

sSNVs

CAPS

C3

C3: An R package for cross-species compendium-based cell-type identification

SeqVis

PAD

PAD (Proximal and Distal) clustering