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scotpho-profiles-tool
ScotPHO profiles tool codephsmethods
An R package to standardise methods used in Public Health Scotland (https://public-health-scotland.github.io/phsmethods/)R-Resources
phstemplates
Standard R templates and project structure for Public Health Scotland (https://public-health-scotland.github.io/phstemplates/)Hospital-Acute-Activity
Code to create Public Health Scotland's Hospital Acute Care Activity publicationphsstyles
Standard Graphic Styles for use in Public Health Scotland (https://public-health-scotland.github.io/phsstyles/)GitHub-guidance
Guidance and best practice rules for using GitHub within Public Health ScotlandToolkit
Templates and resources for transforming publicationsresources
Useful resources for the software and methodologies used by the Transforming Publishing teamr-project-structure
A template for R projectshsmr
Reproducible Analytical Pipeline of the Hospital Standardised Mortality Ratio (HSMR) quarterly publicationscotpho-indicator-production
Code used to prepare data for indicators in ScotPHO's profilesphsopendata
Functions to extract and interact with data from the Scottish Health and Social Care Open Data platform.learn-git
covid-wider-impacts
Code for the COVID-19 wider impacts on the health care system publicationPHI-useR-group
learnr-online
An interactive, online introduction to R training for employees in Public Health Scotland.measuring-inequalities
slfhelper
An R package for working with the SLFsLife-Expectancy
Code to generate ScotPHO life expectancy and healthy life expectancy estimates published in ScotPHO online profiles toolscotpho-plotly-charts
Charts for ScotPHO's website using Plotlyr-pubhealth-workshop
Presentations, code and exercises for workshop on tools for public health dataPython-Resources
A place to share useful resources on Python. https://nbviewer.jupyter.org/github/Public-Health-Scotland/Python-Resources/blob/master/Python%20Guidance%20for%20PHI.ipynb?flush_cache=truetechnical-docs
Technical documentation, including guidance and best practice for Public Health Scotland (PHS)Open-Data
Examples of how to use the API of https://www.opendata.nhs.scot/learnr-intro
rshiny-project-structure
Mental-Health-Inpatient-Activity
R-exercise
A short R exercise for Public Health Scotland analysts interested in creating a Reproducible Analytical Pipelinesource-linkage-files
This repo is for the syntax used for the PHS Source Linkage File projectcovid-19_respiratory_surveillance_dashboard
A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotlandsocial-care
posit-workbench-job-scheduler
Functions to assist with programmatically launching Workbench Jobs on the Kubernetes cluster, and scheduling these to run a specific time.SBSP_restartMetrics
rmarkdown-training-online
An interactive, online introduction to R Markdown training for employees in Public Health Scotland.dementia-pds
Reproducible Analytical Pipeline (RAP) for Dementia Post-Diagnostic Support (PDS) management reports and publication.knowledge-base
Web app for PHS staff to access training and guidance resources and social content related to Data Science.SPBAND
Code to produce the Scottish Pregnancy, Births and Neonatal Data dashboard (SPBAND)SPSS-Resources
learn-shiny
GyleCodeClub
Notes and resources for the Gyle Code Clubcovid-vulnerability
ScotPHO COVID-19 Community Vulnerabilityioslides-structure
A template for ioslidesparquet_workshop
git-guide
A quick start guide for using Git and GitHub: https://public-health-scotland.github.io/git-guide/AHP-Long-Waits
AAA-KPIs
scotpho-lookups
Preparing geography and population lookups used to produce indicator datadelayed-discharges-monthly
RAP (Reproducible Analytical Pipeline) of the Delayed Discharges monthly publicationFolder-Structure-RMD
R markdown scripts for the publication templatephsmisc
What the Package Does (One Line, Title Case)qpi-dashboard
Processing of Quality Performance Indicators data, as part of the National Cancer Quality Programme (Scotland).cocin-scotland
Analysis of Scottish data from ISARIC CoCIN datasetCASES
Cancer and Adult Screening Engagement and Skills repositorymsg-indicators
Code for creating data for the MSG Indicatorshealth-and-care-experience-survey-2023
This repository contains the code for analysing the 2023 health and care experience surveyAAA-quarterly-extract
NTTS2019
Slides for NTTS Conference 2019scotpho-website-updates
Code used to prepare data for ScotPHO's websiteCOVID-19-Publication-Dashboard
Dashboard for weekly COVID-19 publicationd3-linechart
This is the first draft of a template to create line charts with options to select NHS Boards and locations within NHS Boards.phsverse
Easily install and load packages developed in PHSend-of-life-pub
Reproducible Analytical Pipeline (RAP) for Percentage of End of Life Spent at Home or in a Community Setting PublicationDRHS_Data_Trend
DRHS data trend pageRAP-presentation
P1-BMI
Primary 1 Body Mass Index Publication repoposit-workbench-install-gt
Details of how to install the {gt} package on Posit WorkbenchRAP-Awareness-Session-2019
CAPTND
A patient-level dataset for outpatient mental health in Scotland.nss-r-resources-app
App to host different resources on R for NSS analystsWaiting_Times_Clinical_Prioritisation
This repository contains the Reproducible Analytical Pipeline (RAP) to produce the quarterly statistics on clinical prioritisation, part of the Stage of Treatment (SoT) publication.smr1_admissions_table
SBSS
Reproducible Analytical Pipeline of the Scottish Bowel Screening Programme Statistics (SBSS) publicationscotpho-profiles-app
Code behind re-development of online ScotPHO profiles shiny appcancer-patient-experience-survey-2024
This repository contains the code for analysing the 2024 cancer patient experience surveydelayed-discharges-monthly-archived
Reproducible Analytical Pipeline of the Delayed Discharges monthly publicationahp_dsa
AHP MSK data science acceleratorhepatitisc-international-chart
national-indicators
Code for production of the National IndicatorsNIPT-Evaluation-Public
disclosure_control
Performs Statistical Disclosure Control (SDC) on a variety of datasets to reduce the risk of patients being identified within a dataset.dose_instruction_parser
Parsing prescription dose instructions using Named Entity Recognition and rulescancer-routes-to-diagnosis
Emergency and Non-Emergency Routes to Cancer Diagnosiscare-and-wellbeing-dashboard
package-dev-guidance-site
Repo for a small website of resource on PHS/general best practice for package developmentNational-Stats-Template
Templates for producing National Statistics Publications using RMarkdownLIST-examples
A collection of best practice examples for use by LIST team members.Love Open Source and this site? Check out how you can help us