• Stars
    star
    1
  • Language
    Jupyter Notebook
  • License
    MIT License
  • Created over 7 years ago
  • Updated over 7 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Simple query to table conversion and language analysis.

More Repositories

1

structurizr-python

A Python 3 port of Simon Brown's Structurizr diagrams-as-code architecture description tool.
Python
65
star
2

nextflow-gotchas

A collection of unexpected challenges and learnings with nextflow and nf-core.
Shell
33
star
3

fastapi-mount

A minimal application for prototyping mounting the main FastAPI at a sub path.
Python
15
star
4

errorpages-demo

A Docker stack that demonstrates different desirable behaviour of the traefik errors middleware. Please read the accompanying post.
HTML
13
star
5

nextflow-utility-services

A collection of Groovy classes that provide utility services to nextflow pipelines.
Groovy
12
star
6

BRENDA-Parser

Classes to parse the BRENDA database.
Python
11
star
7

fastapi-base

A base Docker image for microservices using FastAPI. The Docker image environment is based on Alpine Linux or Debian.
Shell
9
star
8

Notebooks-Launcher

script to handle setting up, launching, and shutting down of ipython notebook instances per user.
Python
6
star
9

jinja2-ospath

A tiny Jinja2 extension that introduces dirname and basename as template filters.
Python
5
star
10

cookiecutter-python-package

A complete Python package cookiecutter template with lots of bells and whistles.
Python
4
star
11

dependency-info

Retrieve and print Python package dependencies.
Python
4
star
12

metanetx-sdk

Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org registries.
Python
4
star
13

tyche

Randomly sub-sample sequencing reads to a specified coverage or number of bases.
Groovy
4
star
14

jupyter_presentation

Material and notebooks for an interactive Jupyter presentation.
Jupyter Notebook
3
star
15

pymetabolism

handling of metabolic models for FBA, graph theory, and model io.
Python
3
star
16

x-grumpy

A Docker image that can be run with x11docker in order to access the ScrumPy GUI without hassle.
Makefile
3
star
17

nf-core-adr

Structurizr documentation of nf-core
ASL
3
star
18

pip-compile

A minimal Docker image that provides a Python environment with pip-tools in order to lock requirements files.
Dockerfile
3
star
19

Everyday-Utilities

a collection of classes and functions for various non-project related purposes
Python
2
star
20

cookiecutter-nf-plugin

A cookiecutter template for creating nextflow plugins.
Groovy
2
star
21

PolymorphicCpp

Classes and functions demonstrating some of the tricky polymorphic behaviour of C++
C++
2
star
22

pyorganism

a unified framework for analysing organisational principles in living organisms
Python
2
star
23

FROG

Analysis of 50 metabolic models using the opencobra/jeweler pipeline.
HTML
1
star
24

nf-join-map

Demonstrate problems with merging channels using a map as the key to merge by.
Nextflow
1
star
25

nf-file-utils

Query files for their type and compression state.
Groovy
1
star
26

travis-release-notes

Test repository for the improved Travis CI file-based release notes.
Python
1
star
27

help.github.com

GitHub help guides
JavaScript
1
star
28

plasmid-verification

Semi-automated plasmid sequence verification.
Python
1
star
29

kraken2-bracken-test-db

Temporary place to host the kraken2 & Bracken database construction pipeline.
Nextflow
1
star
30

visual-merge

Visualize package hierarchies and allow for links between different hierarchies.
Jupyter Notebook
1
star
31

metanetx-assets

Transform MetaNetX components information and load them into SQL storage.
Python
1
star
32

MfinderWrapper

A python wrapper class for the mfinder C tool.
C
1
star
33

python-conda-travis

Template for testing Python packages on Travis-CI using Miniconda.
Shell
1
star
34

meetup-ipyparallel

Material for the ipyparallel presentation at the Python Users Berlin meetup Oct 2016.
Jupyter Notebook
1
star