Discover @Midnighter Open Source projects

Moritz E. Beber (@Midnighter)

Midnighter

Stars
223
Global Rank 113,145 (Top 4 %)
Followers 99
Following 33
Registered about 15 years ago
Most used languages

Python
41.7 %

Jupyter Notebook
11.1 %

Groovy
11.1 %

Shell
8.3 %

Nextflow 5.6 %

HTML
5.6 %

ASL 2.8 %

Dockerfile
2.8 %

Makefile 2.8 %

JavaScript
2.8 %

C
2.8 %

C++
2.8 %
Location 🇩🇰 Denmark
Country Total Rank 499
Country Ranking

ASL 1

Nextflow 1

Groovy
4

Makefile 34

Shell
50

Dockerfile
91

HTML
113

Python
124

Jupyter Notebook
206

C++
532

C
605

JavaScript
2,038

structurizr-python

A Python 3 port of Simon Brown's Structurizr diagrams-as-code architecture description tool.

nextflow-gotchas

A collection of unexpected challenges and learnings with nextflow and nf-core.

fastapi-mount

A minimal application for prototyping mounting the main FastAPI at a sub path.

nextflow-utility-services

A collection of Groovy classes that provide utility services to nextflow pipelines.

errorpages-demo

A Docker stack that demonstrates different desirable behaviour of the traefik errors middleware. Please read the accompanying post.

BRENDA-Parser

Classes to parse the BRENDA database.

fastapi-base

A base Docker image for microservices using FastAPI. The Docker image environment is based on Alpine Linux or Debian.

Notebooks-Launcher

script to handle setting up, launching, and shutting down of ipython notebook instances per user.

jinja2-ospath

A tiny Jinja2 extension that introduces dirname and basename as template filters.

cookiecutter-python-package

A complete Python package cookiecutter template with lots of bells and whistles.

dependency-info

Retrieve and print Python package dependencies.

tyche

Randomly sub-sample sequencing reads to a specified coverage or number of bases.

metanetx-sdk

Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org registries.

pymetabolism

handling of metabolic models for FBA, graph theory, and model io.

jupyter_presentation

Material and notebooks for an interactive Jupyter presentation.

Jupyter Notebook

x-grumpy

A Docker image that can be run with x11docker in order to access the ScrumPy GUI without hassle.

nf-core-adr

Structurizr documentation of nf-core

cookiecutter-nf-plugin

A cookiecutter template for creating nextflow plugins.

Everyday-Utilities

a collection of classes and functions for various non-project related purposes

pip-compile

A minimal Docker image that provides a Python environment with pip-tools in order to lock requirements files.

PolymorphicCpp

Classes and functions demonstrating some of the tricky polymorphic behaviour of C++

conifer-analysis

Post-process conifer output for downstream statistical analysis.

pyorganism

a unified framework for analysing organisational principles in living organisms

FROG

Analysis of 50 metabolic models using the opencobra/jeweler pipeline.

nf-join-map

Demonstrate problems with merging channels using a map as the key to merge by.

nf-file-utils

Query files for their type and compression state.

travis-release-notes

Test repository for the improved Travis CI file-based release notes.

help.github.com

GitHub help guides

plasmid-verification

Semi-automated plasmid sequence verification.

kraken2-bracken-test-db

Temporary place to host the kraken2 & Bracken database construction pipeline.

visual-merge

Visualize package hierarchies and allow for links between different hierarchies.

Jupyter Notebook

metanetx-assets

Transform MetaNetX components information and load them into SQL storage.

MfinderWrapper

A python wrapper class for the mfinder C tool.

python-conda-travis

Template for testing Python packages on Travis-CI using Miniconda.

wikidata-analysis

Simple query to table conversion and language analysis.

Jupyter Notebook

meetup-ipyparallel

Material for the ipyparallel presentation at the Python Users Berlin meetup Oct 2016.

Jupyter Notebook