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TwoSampleMR
R package for performing 2-sample MR using MR-Base databasePHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobankgwasvcf
Reading, querying and writing GWAS summary data in VCF formatieugwasr
R interface to the IEU GWAS database APIawesome-ai
Awesome list for all things AI, ML and deep learninggwas2vcf
Convert GWAS summary statistics to VCFMRInstruments
Data objects for various sets of instrumentsepigraphdb-pqtl
This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.Health-and-Wellbeing-MR
epigraphdb-r
R package for epigraphdbepigraphdb
Examples on using EpiGraphDBmetaboprep
a pipeline of metabolomics data processing and quality controlgwas-vcf-specification
Specification for the GWAS-VCF format (manuscript in preparation)PhenoSpD
MELODI-Presto
A fast and programmatic MELODIgwasglue2
Connecting GWAS summary data to analytical toolsUKBiobankGWAS
Notes and code for running UK Biobank GWAS at the MRC IEUPHESANT-MR-pheWAS-BMI
GLU
A tool for analysing continuous glucose monitoring (CGM) data in epidemiology.godmc
GoDMC analysis pipelinevectology
Using language models and ontology topology to perform semantic mapping of traits between biomedical datasetsCheckSumStats
ieugwaspy
Python interface to the MRC IEU GWAS database APIgenetics.binaRies
Binaries for tools used in genetics in an R packageBiobankPhenotypes
melodi
Mining Enriched Literature Objects to Derive Intermediatesariesmqtl
Scripts to run mQTL analyses as described in the ARIES mQTL paperbp-drug-mr
Multi-ancestry MR of blood pressure drug targetspygwasvcf
Python library for reading GWAS summary statistics in GWAS-VCF filestemmpo
Text mining for mechanism prioritisationqqman_multiple_colours
Manhattan plot function which highlights SNPs in different coloursmrbase_casestudies
Using the MR-Base platform to investigate risk factors and drug targets for thousands of phenotypesgodmc_phase2_analysis
ukbb-prot-prs
genetic-epidemiology-practicals
Practicals for Genetic epidemiology short coursegwas-vcf-performance
Comparison between VCF and plain text storage formats for GWAS summary statisticsMR-maternal-smoking
Analysis code for proxy gene-by-environment Mendelian randomization of maternal smoking on offspring healthepigenetics-journal-club
Repository for the IEU epigenetics journal club papers, presentations and scriptsintroduction-to-r
opengwas-api
API for MRC-IEU OpenGWAS platform (https://gwas.mrcieu.ac.uk)MR-randomization-test
UKBActivityBoutLength
Assessing association of physical activity types and bout length in UK BiobankvarGWAS
GWAS of trait variance (C++)Smoking_IBD
Scripts for analysing the association between smoking and inflammatory bowel disease (IBD)epigraphdb-ctda
codes for the epigraphdb CTAD databaseukbb-covid-collider
GwasDataImport
R package to upload data to GWAS databasePsychiatric-disorder-pheWAS-UKBB
Lifecourse-GWAS
mendelvar_standalone
Standalone version of the MendelVar pipelineopengwas-requests
A place to request or contribute data to the IEU GWAS databaseewascatalog-r
hie-ml
vitD_bonehealth
ALSPAC vitamin D and bone health MR studyeducation_mentalhealth_CVD
PHESANT-MR-pheWAS-smoking
MR-pheWAS of smoking heavinessmet-d-import
UKBB Nightingale import to OpenGWASSchizophrenia_Fertility_Paper
handedness-ewas
epigraphdb_web
Web application (web UI) of the EpiGraphDB platformvariance-iv4-violation
ewascatalog
IGD-elasticsearch
Docker container for creating indexes and indexing GWAS datavarGWAS-ukbb-biomarkers
vcf-reference-datasets
MR-PREG
Repository for the MR-PREG collaborationmrcieu.r-universe.dev
R packages for mrcieu.r-universe.devsleep_duration_pregnancy
Here we provide scripts used in 'Investigating causal relations between sleep duration and risks of adverse pregnancy and perinatal outcomes: Linear and nonlinear Mendelian randomization analyses in up to 356,069 European women'opengwas-infpval-fix
Documentation and fixes for p-value issues for some datasetsgodmc_phase1_analysis
varGWASR
R package to perform regression-based Brown-Forsythe testactivityBigrams
Physical activity phenotyping with activity bigrams, and their association with BMICOVIDITY_selbias
COVIDITY BHF-Project - Working Package 3 about selection bias in COVID-19 studies across UK cohortsmet-e-import
prot-c-import
Import Suhre et al 2017 protein datafinn-a-import
FinnGen R2 GWAS data importmrtwin_power
opengwas
bbj-a-import
Import Japan Biobank GWASqueryukbppp
Query UKB-PPP dataepigraphdb-asq
Annotated Semantic Queriesprot-lungcancer
Protein associations with lung cancer preMVMRalcsmo
A repository of code for a MVMR study of the effect of alcohol and smoking on lung functionIlluminaFinalRep_LRRBAF
Estimate LRR and BAF from Illumina Final Reportopengwas-reports
Report module for IEU GWAS pipelinebiorxiv-medrxiv-tdm
gwas_processing
upptime
Use upptime to monitor web platform statusfinn-b-import
Import Finngen R5 GWASPHESANT-MR-PheWAS-Insomnia
An MR-PheWAS of insomnia using UK Biobank and PHESANT.panukbb_gwas_import
Import pan UKBB GWAS analysis https://pan.ukbb.broadinstitute.org/gwas2vcfweb
Web interface for gwas2vcfcistrans_pqtl
gwaspipeline
Pipeline for genetic epidemiology projects at Univsersity of Bristolmrmn
Website for the Mendelian randomization Methods NetworkAFS_AAM_LifeHistory
Analysis scripts for "Using Mendelian randomization to investigate life history theory: the effects of age at menarche and first sexual intercourse on reproductive and behavioural outcomes"oci-elastic
IEU version of https://github.com/cloud-partners/oci-elasticmdNLR-and-Rheumatoid-Arthritis-Script
Rheumatoid arthritis (RA) is a disease of chronic systemic inflammation (SI). In the present study, we used four datasets to explore whether methylation-derived neutrophil-to-lymphocyte ratio (mdNLR) might be a marker of SI in new onset, untreated, and treated prevalent RA cases and/or a marker of treatment response to the tumour necrosis factor inhibitor (TNFi) etanercept.Love Open Source and this site? Check out how you can help us