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TwoSampleMR
R package for performing 2-sample MR using MR-Base databasePHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobankgwasglue
Linking GWAS data to analytical tools in Rieugwasr
R interface to the IEU GWAS database APIgwasvcf
Reading, querying and writing GWAS summary data in VCF formatawesome-ai
Awesome list for all things AI, ML and deep learninggwas2vcf
Convert GWAS summary statistics to VCFMRInstruments
Data objects for various sets of instrumentsepigraphdb-pqtl
This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.Health-and-Wellbeing-MR
epigraphdb
Examples on using EpiGraphDBepigraphdb-r
R package for epigraphdbmetaboprep
a pipeline of metabolomics data processing and quality controlgwas-vcf-specification
Specification for the GWAS-VCF format (manuscript in preparation)gwasglue2
Connecting GWAS summary data to analytical toolsPhenoSpD
MELODI-Presto
A fast and programmatic MELODIUKBiobankGWAS
Notes and code for running UK Biobank GWAS at the MRC IEUgodmc
GoDMC analysis pipelinePHESANT-MR-pheWAS-BMI
ieugwaspy
Python interface to the MRC IEU GWAS database APIGeneHackman
Pipeline for genetic epidemiology projects at Univsersity of Bristolgenetics.binaRies
Binaries for tools used in genetics in an R packagevectology
Using language models and ontology topology to perform semantic mapping of traits between biomedical datasetsCheckSumStats
BiobankPhenotypes
pygwasvcf
Python library for reading GWAS summary statistics in GWAS-VCF filesmelodi
Mining Enriched Literature Objects to Derive Intermediatesariesmqtl
Scripts to run mQTL analyses as described in the ARIES mQTL paperbp-drug-mr
Multi-ancestry MR of blood pressure drug targetstemmpo
Text mining for mechanism prioritisationgodmc_phase2_analysis
qqman_multiple_colours
Manhattan plot function which highlights SNPs in different coloursUKBActivityBoutLength
Assessing association of physical activity types and bout length in UK Biobankmrbase_casestudies
Using the MR-Base platform to investigate risk factors and drug targets for thousands of phenotypesintroduction-to-r
opengwas-api
API for MRC-IEU OpenGWAS platform (https://gwas.mrcieu.ac.uk)epigenetics-journal-club
Repository for the IEU epigenetics journal club papers, presentations and scriptsLifecourse-GWAS
genetic-epidemiology-practicals
Practicals for Genetic epidemiology short courseukbb-prot-prs
gwas-vcf-performance
Comparison between VCF and plain text storage formats for GWAS summary statisticsMR-maternal-smoking
Analysis code for proxy gene-by-environment Mendelian randomization of maternal smoking on offspring healthukbb-covid-collider
MR-randomization-test
Psychiatric-disorder-pheWAS-UKBB
ewascatalog-r
varGWAS
GWAS of trait variance (C++)Smoking_IBD
Scripts for analysing the association between smoking and inflammatory bowel disease (IBD)epigraphdb-ctda
codes for the epigraphdb CTAD databaseeducation_mentalhealth_CVD
GwasDataImport
R package to upload data to GWAS databasebiorxiv-medrxiv-tdm
ewascatalog
PHESANT-MR-PheWAS-Insomnia
An MR-PheWAS of insomnia using UK Biobank and PHESANT.mendelvar_standalone
Standalone version of the MendelVar pipelinemrcieu.r-universe.dev
R packages for mrcieu.r-universe.devsleep_duration_pregnancy
Here we provide scripts used in 'Investigating causal relations between sleep duration and risks of adverse pregnancy and perinatal outcomes: Linear and nonlinear Mendelian randomization analyses in up to 356,069 European women'opengwas-requests
A place to request or contribute data to the IEU GWAS databasehie-ml
vitD_bonehealth
ALSPAC vitamin D and bone health MR studyPHESANT-MR-pheWAS-smoking
MR-pheWAS of smoking heavinessmet-d-import
UKBB Nightingale import to OpenGWASqueryukbppp
Query UKB-PPP dataSchizophrenia_Fertility_Paper
handedness-ewas
epigraphdb_web
Web application (web UI) of the EpiGraphDB platformgwas_processing
IGD-elasticsearch
Docker container for creating indexes and indexing GWAS datavariance-iv4-violation
varGWAS-ukbb-biomarkers
vcf-reference-datasets
MR-PREG
Repository for the MR-PREG collaborationPHESANT-IV-pheWAS-relative-school-age
IV-pheWAS of relative school ageopengwas-infpval-fix
Documentation and fixes for p-value issues for some datasetsgodmc_phase1_analysis
varGWASR
R package to perform regression-based Brown-Forsythe testactivityBigrams
Physical activity phenotyping with activity bigrams, and their association with BMICOVIDITY_selbias
COVIDITY BHF-Project - Working Package 3 about selection bias in COVID-19 studies across UK cohortsmet-e-import
prot-c-import
Import Suhre et al 2017 protein dataopengwas
bbj-a-import
Import Japan Biobank GWASepigraphdb-asq
Annotated Semantic Queriesmrtwin_power
cistrans_pqtl
finn-a-import
FinnGen R2 GWAS data importMVMRalcsmo
A repository of code for a MVMR study of the effect of alcohol and smoking on lung functionIlluminaFinalRep_LRRBAF
Estimate LRR and BAF from Illumina Final Reportprot-lungcancer
Protein associations with lung cancer preopengwas-reports
Report module for IEU GWAS pipelinearies
Functions for loading the ARIES DNA methhylation dataupptime
Use upptime to monitor web platform statusfinn-b-import
Import Finngen R5 GWASpanukbb_gwas_import
Import pan UKBB GWAS analysis https://pan.ukbb.broadinstitute.org/gwas2vcfweb
Web interface for gwas2vcfmrmn
Website for the Mendelian randomization Methods NetworkAFS_AAM_LifeHistory
Analysis scripts for "Using Mendelian randomization to investigate life history theory: the effects of age at menarche and first sexual intercourse on reproductive and behavioural outcomes"oci-elastic
IEU version of https://github.com/cloud-partners/oci-elasticmdNLR-and-Rheumatoid-Arthritis-Script
Rheumatoid arthritis (RA) is a disease of chronic systemic inflammation (SI). In the present study, we used four datasets to explore whether methylation-derived neutrophil-to-lymphocyte ratio (mdNLR) might be a marker of SI in new onset, untreated, and treated prevalent RA cases and/or a marker of treatment response to the tumour necrosis factor inhibitor (TNFi) etanercept.Love Open Source and this site? Check out how you can help us