InstituteforDiseaseModeling/covid-health-systems InstituteforDiseaseModeling/covid-health-systems

  • Stars
    star
    13
  • Rank 1,504,750 (Top 30 %)
  • Language
    R
  • License
    Other
  • Created over 4 years ago
  • Updated about 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
InstituteforDiseaseModeling/covid-health-systems
github

InstituteforDiseaseModeling

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Simulate various COVID-19 health system capacity scenarios

More Repositories

1

covasim

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
Python
247
star
2

EMOD

Source files for building the IDM EMOD disease transmission model.
C
92
star
3

synthpops

Create synthetic populations for COVID-19 epidemic analyses.
Python
44
star
4

vis-tools

Visualization Toolkit
JavaScript
17
star
5

COVID-public

Repo to share open work on the COVID-19 outbreak
HTML
15
star
6

IDM-CMS

IDM compartmental modeling software (CMS)
C#
7
star
7

kingcounty_rainier

RAINIER applied to COVID-19 data in King County, WA from the Washington Disease Reporting System
Python
7
star
8

hpvsim

Human papillomavirus simulator (HPVsim)
Python
7
star
9

covid-mobility-and-behavior

Jupyter Notebook
5
star
10

idmtools

Python
4
star
11

PACE-HRH

PACE-HRH (Population-Aware Capacity Estimator for Human Resources for Health)
R
3
star
12

cookiecutter-dash-ui

cookiecutter project for a dash UI
Python
2
star
13

laser

Light Agent Spatial modeling for ERadication
Python
2
star
14

Climate

IDM climate files for Senegal 2013
Python
2
star
15

SeasonalityStudyOfGEMSdata

Data and code associated with "The seasonality of diarrheal pathogens: A retrospective study of seven sites over three years"
MATLAB
2
star
16

docs-emod-scenarios

Tutorial materials as referenced in IDM's documentation for EMOD, an agent-based disease dynamics model.
Python
2
star
17

EMOD-InputData

Full set of input data files for use with the EMOD disease transmission model
Python
2
star
18

PACE-HRH-UI

PACE-HRH-UI is a health capacity estimation tool built using R and Shinyapps
R
2
star
19

GWSpatialGenetics

The Institute of Disease Modeling interdisciplinary collaboration with Elizabeth Thiele (Vassar) and James Cotton (Wellcome Sanger Institute) to maximize the value of epidemiological and genetics data to understand Guinea worm transmission in Chad.
HTML
2
star
20

stepping-back-to-school

Code used for IDM's school reopening analysis presented in the Stepping Back to School modeling report
Python
1
star
21

malaria-model_validation

Python
1
star
22

SFS-coinfection-interactions

R
1
star
23

EMOD-Typhoid

IDM typhoid model source code for ASTMH November 2016
C++
1
star
24

EMOD-Generic-Scripts

Demonstration simulations using Generic-Ongoing branch of EMOD
Python
1
star
25

genepi_science

a space for genepi research collaboration
1
star
26

HIV-MetaAnalysis-Shiny

R
1
star
27

EVD

Data, analysis, visualization of 2014-2015 West African Ebola outbreak
Python
1
star
28

archetypes-intervention-impact

R
1
star
29

covasim_webapp

Webapp for Covasim
Python
1
star
30

testing-the-waters

Supporting code for "Testing the waters: time to go back to school?"
Python
1
star
31

SAEDashboard

JavaScript
1
star
32

TransmissionSankey

Look at flows of where infections come from and go to, cross-referencing EMOD log files
HTML
1
star
33

EMOD-Generic

Source files for building IDM's EMOD computational epidemiology software.
C
1
star
34

winogrande-mmlu-clinical-za

Expanding Reasoning Benchmarks in Low-Resourced African Languages: Winogrande and Clinical MMLU in Afrikaans, Xhosa, and Zulu
Jupyter Notebook
1
star
35

abm-software-comparison

ABM software comparison for spatial disease modeling
1
star