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covasim
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventionsEMOD
Source files for building the IDM EMOD disease transmission model.synthpops
Create synthetic populations for COVID-19 epidemic analyses.vis-tools
Visualization ToolkitCOVID-public
Repo to share open work on the COVID-19 outbreakcovid-health-systems
Simulate various COVID-19 health system capacity scenariosIDM-CMS
IDM compartmental modeling software (CMS)kingcounty_rainier
RAINIER applied to COVID-19 data in King County, WA from the Washington Disease Reporting Systemhpvsim
Human papillomavirus simulator (HPVsim)covid-mobility-and-behavior
PACE-HRH
PACE-HRH (Population-Aware Capacity Estimator for Human Resources for Health)cookiecutter-dash-ui
cookiecutter project for a dash UIClimate
IDM climate files for Senegal 2013SeasonalityStudyOfGEMSdata
Data and code associated with "The seasonality of diarrheal pathogens: A retrospective study of seven sites over three years"docs-emod-scenarios
Tutorial materials as referenced in IDM's documentation for EMOD, an agent-based disease dynamics model.laser
Light Agent Spatial modeling for ERadicationEMOD-InputData
Full set of input data files for use with the EMOD disease transmission modelPACE-HRH-UI
PACE-HRH-UI is a health capacity estimation tool built using R and ShinyappsGWSpatialGenetics
The Institute of Disease Modeling interdisciplinary collaboration with Elizabeth Thiele (Vassar) and James Cotton (Wellcome Sanger Institute) to maximize the value of epidemiological and genetics data to understand Guinea worm transmission in Chad.stepping-back-to-school
Code used for IDM's school reopening analysis presented in the Stepping Back to School modeling reportmalaria-model_validation
SFS-coinfection-interactions
EMOD-Typhoid
IDM typhoid model source code for ASTMH November 2016EMOD-Generic-Scripts
Demonstration simulations using Generic-Ongoing branch of EMODgenepi_science
a space for genepi research collaborationHIV-MetaAnalysis-Shiny
EVD
Data, analysis, visualization of 2014-2015 West African Ebola outbreakarchetypes-intervention-impact
covasim_webapp
Webapp for Covasimtesting-the-waters
Supporting code for "Testing the waters: time to go back to school?"SAEDashboard
TransmissionSankey
Look at flows of where infections come from and go to, cross-referencing EMOD log filesEMOD-Generic
Source files for building IDM's EMOD computational epidemiology software.winogrande-mmlu-clinical-za
Expanding Reasoning Benchmarks in Low-Resourced African Languages: Winogrande and Clinical MMLU in Afrikaans, Xhosa, and Zuluabm-software-comparison
ABM software comparison for spatial disease modelingLove Open Source and this site? Check out how you can help us