HullUni-bioinformatics/Haenfling_et_al_2016 HullUni-bioinformatics/Haenfling_et_al_2016

  • Stars
    star
    6
  • Rank 2,526,712 (Top 51 %)
  • Language
    R
  • Created over 8 years ago
  • Updated over 8 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
HullUni-bioinformatics/Haenfling_et_al_2016
github

HullUni-bioinformatics

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

More Repositories

1

ReproPhylo

Reproducible Phylogenomics
Jupyter Notebook
22
star
2

TE-search-tools

Python wrappers for programs that search for transposable elements
Jupyter Notebook
19
star
3

metaBEAT

Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
Python
18
star
4

Nematoda-TE-Evolution

Analysis for the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"
Jupyter Notebook
8
star
5

MIG-Phylogenomics

MIG Meloidogyne species phylogenomics and and ploidy analysis
Python
5
star
6

genomisc-training

Miscellaneous materials (tutorials, exercises, testdata) to develop essential 'survival'-skills in bioinformatics.
5
star
7

ReproPhyloDockerfile

Python
4
star
8

ReproPhyloGalaxy

A Galaxy instance with ReproPhylo tools
Python
3
star
9

Li_et_al_2019_eDNA_fish_monitoring

Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes
R
3
star
10

Griffiths_et_al_2020_Fens_eDNA

Data processing workflow and supplementary info for: Griffiths et al. (2020) - Environmental DNA metabarcoding provides enhanced detection of the European eel Anguilla anguilla and fish community structure in pumped river catchments
R
2
star
11

metabarcode-course

EvoHull bioinformatics and metabarcoding repository
HTML
2
star
12

HullUni-bioinformatics.github.io

CSS
2
star
13

Szitenberg_et_al_2014

Python
2
star
14

Curated_reference_databases

This repository contains the complete description of how we produced the curated reference databases for the studies in Evolutionary and Environmental Genomics Group (@EvoHull)
HTML
2
star
15

Harper_et_al_2018

Jupyter Notebook
2
star
16

Harper_et_al_2020_mustelid_diet_metabarcoding

R
1
star
17

egrep-2016

Repository for course 'Environmental Genomics Research Projects (egrep)' 2016 @EvoHull
HTML
1
star
18

metabarcode-course-2016

Data for 'Reproducible metabarcoding course' 2016 @EvoHull
HTML
1
star
19

Harper_et_al_2020_crucian_carp_impact_invertebrates_conventional_molecular_tools

R
1
star
20

Dockerize

This repository contains contexts for Docker images build for miscellaneous pieces of bioinformatics software.
Shell
1
star
21

Handley_et_al_2019

Data processing workflow and supplementary data for Handley et al. 2019 - Temporal and spatial variation in distribution of fish environmental DNA in Englandโ€™s largest lake
Jupyter Notebook
1
star
22

Your-Species-In-GenBank

1
star
23

Li_et_al_2018_eDNA_filtration

Data processing workflow and supplementary data for Li et al. 2018 - The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding
R
1
star