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ReproPhylo
Reproducible PhylogenomicsTE-search-tools
Python wrappers for programs that search for transposable elementsmetaBEAT
Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis ToolNematoda-TE-Evolution
Analysis for the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"Haenfling_et_al_2016
Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methodsMIG-Phylogenomics
MIG Meloidogyne species phylogenomics and and ploidy analysisgenomisc-training
Miscellaneous materials (tutorials, exercises, testdata) to develop essential 'survival'-skills in bioinformatics.ReproPhyloDockerfile
ReproPhyloGalaxy
A Galaxy instance with ReproPhylo toolsLi_et_al_2019_eDNA_fish_monitoring
Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakesGriffiths_et_al_2020_Fens_eDNA
Data processing workflow and supplementary info for: Griffiths et al. (2020) - Environmental DNA metabarcoding provides enhanced detection of the European eel Anguilla anguilla and fish community structure in pumped river catchmentsHullUni-bioinformatics.github.io
Szitenberg_et_al_2014
Curated_reference_databases
This repository contains the complete description of how we produced the curated reference databases for the studies in Evolutionary and Environmental Genomics Group (@EvoHull)Harper_et_al_2018
Harper_et_al_2020_mustelid_diet_metabarcoding
egrep-2016
Repository for course 'Environmental Genomics Research Projects (egrep)' 2016 @EvoHullmetabarcode-course-2016
Data for 'Reproducible metabarcoding course' 2016 @EvoHullHarper_et_al_2020_crucian_carp_impact_invertebrates_conventional_molecular_tools
Dockerize
This repository contains contexts for Docker images build for miscellaneous pieces of bioinformatics software.Handley_et_al_2019
Data processing workflow and supplementary data for Handley et al. 2019 - Temporal and spatial variation in distribution of fish environmental DNA in Englandโs largest lakeYour-Species-In-GenBank
Li_et_al_2018_eDNA_filtration
Data processing workflow and supplementary data for Li et al. 2018 - The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcodingLove Open Source and this site? Check out how you can help us