@HullUni-bioinformatics

Top repositories

1

ReproPhylo

Reproducible Phylogenomics
Jupyter Notebook
22
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2

TE-search-tools

Python wrappers for programs that search for transposable elements
Jupyter Notebook
19
star
3

metaBEAT

Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
Python
18
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4

Nematoda-TE-Evolution

Analysis for the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"
Jupyter Notebook
8
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5

Haenfling_et_al_2016

Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
R
6
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6

MIG-Phylogenomics

MIG Meloidogyne species phylogenomics and and ploidy analysis
Python
5
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7

genomisc-training

Miscellaneous materials (tutorials, exercises, testdata) to develop essential 'survival'-skills in bioinformatics.
5
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8

ReproPhyloDockerfile

Python
4
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9

ReproPhyloGalaxy

A Galaxy instance with ReproPhylo tools
Python
3
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10

Li_et_al_2019_eDNA_fish_monitoring

Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes
R
3
star
11

Griffiths_et_al_2020_Fens_eDNA

Data processing workflow and supplementary info for: Griffiths et al. (2020) - Environmental DNA metabarcoding provides enhanced detection of the European eel Anguilla anguilla and fish community structure in pumped river catchments
R
2
star
12

metabarcode-course

EvoHull bioinformatics and metabarcoding repository
HTML
2
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13

HullUni-bioinformatics.github.io

CSS
2
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14

Szitenberg_et_al_2014

Python
2
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15

Curated_reference_databases

This repository contains the complete description of how we produced the curated reference databases for the studies in Evolutionary and Environmental Genomics Group (@EvoHull)
HTML
2
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16

Harper_et_al_2018

Jupyter Notebook
2
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17

Harper_et_al_2020_mustelid_diet_metabarcoding

R
1
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18

egrep-2016

Repository for course 'Environmental Genomics Research Projects (egrep)' 2016 @EvoHull
HTML
1
star
19

metabarcode-course-2016

Data for 'Reproducible metabarcoding course' 2016 @EvoHull
HTML
1
star
20

Harper_et_al_2020_crucian_carp_impact_invertebrates_conventional_molecular_tools

R
1
star
21

Dockerize

This repository contains contexts for Docker images build for miscellaneous pieces of bioinformatics software.
Shell
1
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22

Handley_et_al_2019

Data processing workflow and supplementary data for Handley et al. 2019 - Temporal and spatial variation in distribution of fish environmental DNA in Englandโ€™s largest lake
Jupyter Notebook
1
star
23

Your-Species-In-GenBank

1
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24

Li_et_al_2018_eDNA_filtration

Data processing workflow and supplementary data for Li et al. 2018 - The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding
R
1
star