Gregor-Mendel-Institute/aradeepopsis Gregor-Mendel-Institute/aradeepopsis

  • Stars
    star
    40
  • Rank 680,660 (Top 14 %)
  • Language Nextflow
  • License
    GNU General Publi...
  • Created almost 5 years ago
  • Updated about 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
Gregor-Mendel-Institute/aradeepopsis
github

Gregor-Mendel-Institute

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

More Repositories

1

mlmm

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
16
star
2

bookend

End-guided RNA assembler
Python
15
star
3

TRG-ImageProcessing

Swarts Lab CNN stuff
Python
12
star
4

atpolydb

Atwell et al data
11
star
5

MultLocMixMod

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
R
11
star
6

SNPmatch

A simple python library to identify the most likely strain from the population
Python
9
star
7

mtmm

A mixed-model approach for genome-wide association studies of correlated traits in structured populations
R
7
star
8

tissue-enrichment-test

R
6
star
9

GWA-Portal

Web-app to store an display GWAS studies
Java
5
star
10

gwaR

A collection of R functions to conduct downstream GWAS analysis for arabidopsis thaliana.
R
4
star
11

PhenoBox-System

The β€œPhenobox”, a flexible, automated, open-source plant phenotyping solution
Python
3
star
12

isoseq3

Nextflow
3
star
13

dormancy

Dormancy Paper infos
R
2
star
14

swedish-genomes

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
Python
2
star
15

sRNA-spike-ins

Contains scripts used to design and analyze small RNA spike-in oligonucleotides as described in Lutzmayer, Enugutti and Nodine (2017) Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data, Scientific Reports
Python
2
star
16

ScanPlateSeg

Python scripts for detection and alignment of dish in scanned seedling data
Python
1
star
17

vbc-cicd-examples

examples for container builds at VBC
Groovy
1
star
18

Plotnikova.2019

Custom software used to analyze data and generate figures for Plotnikova et al. (2019, Plant Cell)
Python
1
star
19

env_init

Linux Environment Initialisation scripts for Scientific Computing on HPC and Workstation Deployments
Shell
1
star
20

nanoPARE

RNA 5' analysis tools for use with the nanoPARE protocol
Python
1
star
21

pyBsHap

Python
1
star