GMI: Gregor Mendel Institute of Molecular Plant Biology GmbH (@Gregor-Mendel-Institute)
Guthub

Gregor-Mendel-Institute

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  • Stars
    star
    153
  • Global Org. Rank 46,660 (Top 15 %)
  • Registered about 12 years ago
  • Most used languages
    Python
         50.0 %
    R
         25.0 %
    Nextflow     10.0 %
    Shell
         5.0 %
    Groovy
         5.0 %
    Java
         5.0 %
  • Location πŸ‡¦πŸ‡Ή Austria
  • Country Total Rank 814
  • Country Ranking
    Nextflow     3
    R
         27
    Groovy
         37
    Python
         259
    Java
         519
    Shell
         821

Top repositories

1

aradeepopsis

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
Nextflow
40
star
2

mlmm

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
16
star
3

bookend

End-guided RNA assembler
Python
15
star
4

TRG-ImageProcessing

Swarts Lab CNN stuff
Python
12
star
5

atpolydb

Atwell et al data
11
star
6

MultLocMixMod

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
R
11
star
7

SNPmatch

A simple python library to identify the most likely strain from the population
Python
9
star
8

mtmm

A mixed-model approach for genome-wide association studies of correlated traits in structured populations
R
7
star
9

tissue-enrichment-test

R
6
star
10

GWA-Portal

Web-app to store an display GWAS studies
Java
5
star
11

gwaR

A collection of R functions to conduct downstream GWAS analysis for arabidopsis thaliana.
R
4
star
12

PhenoBox-System

The β€œPhenobox”, a flexible, automated, open-source plant phenotyping solution
Python
3
star
13

isoseq3

Nextflow
3
star
14

dormancy

Dormancy Paper infos
R
2
star
15

swedish-genomes

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
Python
2
star
16

sRNA-spike-ins

Contains scripts used to design and analyze small RNA spike-in oligonucleotides as described in Lutzmayer, Enugutti and Nodine (2017) Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data, Scientific Reports
Python
2
star
17

ScanPlateSeg

Python scripts for detection and alignment of dish in scanned seedling data
Python
1
star
18

vbc-cicd-examples

examples for container builds at VBC
Groovy
1
star
19

Plotnikova.2019

Custom software used to analyze data and generate figures for Plotnikova et al. (2019, Plant Cell)
Python
1
star
20

env_init

Linux Environment Initialisation scripts for Scientific Computing on HPC and Workstation Deployments
Shell
1
star
21

nanoPARE

RNA 5' analysis tools for use with the nanoPARE protocol
Python
1
star
22

pyBsHap

Python
1
star