Genentech/polygraph

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27
Rank 900,932 (Top 18 %)
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Jupyter Notebook
License
MIT License
Created 12 months ago
Updated 5 months ago

Genentech/polygraph

Genentech

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Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

gReLU

gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

equifold

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

scimilarity

A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

pviz

sVAE

walk-jump

Official repository for discrete Walk-Jump Sampling (dWJS)

iterative-perturb-seq

Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors

Jupyter Notebook

regLM

Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.

Jupyter Notebook

dcdfg

covtracer

Tools for contextualizing tests, built using covr test traces.

jmpost

Absolve

Absolve antibody variable domain sequence analysis

psborrow2

psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysis

ringer

RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusion

beignet

A standard library for biological research.

GraphGUIDE

Jupyter Notebook

Isosceles

The Isoforms from Single-Cell; Long-read Expression Suite

midasHLA

R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.

GameRank

gPKPDviz

Perturb-OT

Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.

Jupyter Notebook

nodags-flows

Jupyter Notebook

branched-diffusion

Jupyter Notebook

SASS

rd2markdown

uniprot-mongodb

uniprot-js

cremp

CREMP: Conformer-Rotamer Ensembles of Macrocyclic Peptides for Machine Learning

multiGroupVI

Jupyter Notebook

fishtones-js

Islander

Jupyter Notebook

battery

Architecture framework for Shiny Apps

FacileDataSet

A fluent API for accessing multi-assay high-throughput genomics data.

bandwidth-graph-generation

data-detective

contrastive-ops

Jupyter Notebook

g_ani

Isosceles_Paper

pviz-app-vep

pviz-app-proteomics-3d

topological_PRM_for_lungHRCT

Lung image analysis pipeline for topological PRM maps

phase1b

spex_frontend

genentech.github.io

ConMedClassify

Process clinical ADaM-format data and classify subjects into profiles based on their concomitant medication usage within a clinical trial.

cancer-sc-embed

Jupyter Notebook

spex_demo

epiregulon

Construct gene regulatory networks and infer transcription factor (TF) activity in single cells by integration of scATAC-seq and scRNA-seq data and incorporation of public bulk TF ChIP-seq data.

t_opt

cdd_chem