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gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.equifold
Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representationscimilarity
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.pviz
PvizsVAE
walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)polygraph
Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.regLM
Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.dcdfg
covtracer
Tools for contextualizing tests, built using covr test traces.jmpost
Absolve
Absolve antibody variable domain sequence analysispsborrow2
psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysisringer
RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusionbeignet
A standard library for biological research.GraphGUIDE
Isosceles
The Isoforms from Single-Cell; Long-read Expression SuitemidasHLA
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.GameRank
gPKPDviz
Perturb-OT
Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.nodags-flows
branched-diffusion
SASS
rd2markdown
uniprot-mongodb
uniprot-js
cremp
CREMP: Conformer-Rotamer Ensembles of Macrocyclic Peptides for Machine LearningmultiGroupVI
fishtones-js
Islander
battery
Architecture framework for Shiny AppsFacileDataSet
A fluent API for accessing multi-assay high-throughput genomics data.bandwidth-graph-generation
data-detective
contrastive-ops
g_ani
Isosceles_Paper
pviz-app-vep
pviz-app-proteomics-3d
topological_PRM_for_lungHRCT
Lung image analysis pipeline for topological PRM mapsphase1b
spex_frontend
genentech.github.io
ConMedClassify
Process clinical ADaM-format data and classify subjects into profiles based on their concomitant medication usage within a clinical trial.cancer-sc-embed
spex_demo
epiregulon
Construct gene regulatory networks and infer transcription factor (TF) activity in single cells by integration of scATAC-seq and scRNA-seq data and incorporation of public bulk TF ChIP-seq data.t_opt
cdd_chem
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