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gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.equifold
Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representationscimilarity
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.pviz
PvizsVAE
iterative-perturb-seq
Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priorspolygraph
Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.regLM
Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.dcdfg
covtracer
Tools for contextualizing tests, built using covr test traces.jmpost
Absolve
Absolve antibody variable domain sequence analysispsborrow2
psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysisringer
RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusionbeignet
A standard library for biological research.GraphGUIDE
Isosceles
The Isoforms from Single-Cell; Long-read Expression SuitemidasHLA
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.GameRank
gPKPDviz
Perturb-OT
Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.nodags-flows
branched-diffusion
SASS
rd2markdown
uniprot-mongodb
uniprot-js
cremp
CREMP: Conformer-Rotamer Ensembles of Macrocyclic Peptides for Machine LearningmultiGroupVI
fishtones-js
Islander
battery
Architecture framework for Shiny AppsFacileDataSet
A fluent API for accessing multi-assay high-throughput genomics data.bandwidth-graph-generation
data-detective
contrastive-ops
g_ani
Isosceles_Paper
pviz-app-vep
pviz-app-proteomics-3d
topological_PRM_for_lungHRCT
Lung image analysis pipeline for topological PRM mapsphase1b
spex_frontend
genentech.github.io
ConMedClassify
Process clinical ADaM-format data and classify subjects into profiles based on their concomitant medication usage within a clinical trial.cancer-sc-embed
spex_demo
epiregulon
Construct gene regulatory networks and infer transcription factor (TF) activity in single cells by integration of scATAC-seq and scRNA-seq data and incorporation of public bulk TF ChIP-seq data.t_opt
cdd_chem
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