ELELAB/bcl_bh3only_breast_cancer

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GNU General Publi...
Created over 5 years ago
Updated almost 3 years ago

ELELAB/bcl_bh3only_breast_cancer

ELELAB

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repository for publication on bh3-only and bcl proteins in breast cancer

mutatex

scripts and facilities for in-silico mutagenesis with FoldX

RosettaDDGPrediction

PDBminer

scripts to find PBD structures for cancer driver proteins

pyinteraph2

development repository for PyInteraph2

CAncer-bioMarker-Prediction-Pipeline-CAMPP

The Cancer bioMarker Prediction Pipeline (CAMPP)

MoonlightR

TCGAbiolinks_examples

repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks

pyinteraph

A software research tool for the analysis of structural communication in protein ensembles

LUAD_LUSC_TCGA_comparison

Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data

MAVISp

the MAVISp database for structural variants annotation

LipidDyn

repository associated to our pipeline for lipid dynamics

psntools

Moonlight2R

MoonlightR 2.0 development repository

xpyder

xPyder PyMOL Plugin

cancermuts

Software for the automatic annotation of cancer mutations

MAL_MD

repository associated to our study on conformational gating in ammonia lyase

Mol-Analysis

lc3b_cancer_paper

repository with data from our publication on lc3b dynamics and mutations

environments_workshop

Proteomics-TIF

Bioinformatic Analysis of Proteomics Data From Breast Tumour Intersitital Fluid.

N-glycan-TIF

Scripts and Data associated to our publication on analyses of glycan profiling of breast cancer interstitial fluids

PyInKnife2

New version of the PyInKnife tool

TARGET_NBL

repository for analyses of the TARGET-NBL dataset

SNO_investigation_pipelines

TRAP1_activity

miRNA-mRNA_TIF

repository for our publication on miRNA and mRNA of breast cancer

Angle_histograms

MD-wrapper

Pipeline for MD simulation

YEAST_MEMBRANE_MD

Repository for the simulation data and analyses of our publication in collaboration with Chalmer's University on yeast membranes

BCLxL-allo

repository associated to our publication on long-range communication in BCLxL

ULK1_mutations

repository associated to our publication on ULK1 mutations and alterations in cancer

Moonlight2_case_studies

PCM1_LIR

repository for the data and scripts on our publication on PCM1 LIR

PyInKnife

metaD_-GPR40-FFAR1

repository for metadynamics inputs of GPR40/FFAR1