AAFC-BICoE/staphylinidae-ortholog-baitset AAFC-BICoE/staphylinidae-ortholog-baitset

  • Stars
    star
    1
  • Language
    Python
  • License
    MIT License
  • Created over 5 years ago
  • Updated about 1 year ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
AAFC-BICoE/staphylinidae-ortholog-baitset
github

AAFC-BICoE

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Code used to generate Staphylinidae baits for use in BioMob WP2 experiments, along with the bait set itself

More Repositories

1

snakemake-mothur

Example of a snakemake workflow implementation of the mothur MiSEQ SOP
Python
9
star
2

dina-local-deployment

Deployment scripts and files for local deployment of the DINA system
CSS
5
star
3

Galaxy

Galaxy tool wrappers, tool dependencies, and workflows.
Perl
4
star
4

dina-ui

React based user interface for the DINA project / Interface utilisateur basée sur React pour le projet DINA
TypeScript
4
star
5

snakemake-amplicon-metagenomics

Command line bioinformatics workflows, created with Snakemake workflow management tool.
Python
4
star
6

AODP_releases

Releases of Automated Oligo Design Pipeline (AODP): [email protected]
4
star
7

snakemake-partial-genome-pipeline

Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data
Python
3
star
8

matiri

Concurrent mysql backup script with metadata in Sqlite3;
Shell
3
star
9

dina-planning

AAFC-DINA planning repository
3
star
10

dina-base-api

Base DINA API package for Java built on SpringBoot
Java
2
star
11

MBB-Bio-Roll

Extended bioinformatics roll for the Rocks cluster
Perl
2
star
12

seqdb-api

Services for managing laboratory workflows and DNA sequence tracking / Services permettant la gestion de donnée de laboratoire et le suivi de séquences d’ADN.
Java
2
star
13

natural-history-collection-api

AAFC DINA Collection module implementation / Implémentation du module de Collection DINA de AAC
Java
2
star
14

snakemake-trimmomatic

Example of a snakemake encapsulation of trimmomatic
Python
2
star
15

snakemake-barcoding-assembly-pipeline

Snakemake Pipeline for processing COI sequencing data
Python
1
star
16

xlsx2redmine

Import a task list in XLSX format into redmine
Python
1
star
17

puppet-manifests

Repository housing puppet manifests developped by MBB at AAFC
Puppet
1
star
18

MBB-Bio-Roll-Docker

Docker files for bioinformatics & related tools
1
star
19

dockerfiles

Repository housing Dockerfiles created by MBB at AAFC
1
star
20

dina-db-init-container

init-container used to manage DINA databases for dev/test env
Shell
1
star
21

rpmout

List RPMs on a system & generate JSON, HTML, LaTeX, and CSV
Go
1
star
22

biomob-portal-planning

Repository where users and developers can create and discuss issues during development
1
star
23

dina-search-api

Search module for AAFC-DINA
Java
1
star
24

auchenorrhyncha-ortholog-baitset

A repository supporting the methodology and distribution of a custom baitset used for insect target enrichment sequencing
1
star
25

back-lite

Lightweight backup automation, logging, and organisation system with support for multiple targets
Shell
1
star
26

reference-data-manager

Manages reference data for bioinformatics analysis.
Python
1
star
27

dina-py

Python access to the DINA API
1
star
28

elateridae-ortholog-baitset

Code used to generate Elateridae baits for use in BioMob WP2 experiments, along with the bait set itself
Python
1
star