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Biological Informatics CoE @ Agriculture and Agri-Food Canada (@AAFC-BICoE)

AAFC-BICoE

Stars
69
Global Org. Rank 68,164 (Top 22 %)
Registered over 10 years ago
Most used languages

Python
40.9 %

Java
18.2 %

Shell
13.6 %

Perl
9.1 %

TypeScript
4.5 %

CSS
4.5 %

Go
4.5 %

Puppet
4.5 %
Location 🇨🇦 Canada
Country Total Rank 7,434
Country Ranking

Puppet
65

Perl
144

CSS
909

Shell
1,431

Java
1,805

TypeScript
2,326

Go
2,605

Python
2,687

snakemake-mothur

Example of a snakemake workflow implementation of the mothur MiSEQ SOP

dina-local-deployment

Deployment scripts and files for local deployment of the DINA system

Galaxy

Galaxy tool wrappers, tool dependencies, and workflows.

dina-ui

React based user interface for the DINA project / Interface utilisateur basée sur React pour le projet DINA

snakemake-amplicon-metagenomics

Command line bioinformatics workflows, created with Snakemake workflow management tool.

AODP_releases

Releases of Automated Oligo Design Pipeline (AODP): [email protected]

snakemake-partial-genome-pipeline

Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data

matiri

Concurrent mysql backup script with metadata in Sqlite3;

dina-planning

AAFC-DINA planning repository

dina-base-api

Base DINA API package for Java built on SpringBoot and Crnk

MBB-Bio-Roll

Extended bioinformatics roll for the Rocks cluster

seqdb-api

Services for managing laboratory workflows and DNA sequence tracking / Services permettant la gestion de donnée de laboratoire et le suivi de séquences d’ADN.

natural-history-collection-api

AAFC DINA Collection module implementation / Implémentation du module de Collection DINA de AAC

snakemake-trimmomatic

Example of a snakemake encapsulation of trimmomatic

snakemake-barcoding-assembly-pipeline

Snakemake Pipeline for processing COI sequencing data

xlsx2redmine

Import a task list in XLSX format into redmine

puppet-manifests

Repository housing puppet manifests developped by MBB at AAFC

MBB-Bio-Roll-Docker

Docker files for bioinformatics & related tools

dockerfiles

Repository housing Dockerfiles created by MBB at AAFC

dina-db-init-container

init-container used to manage DINA databases for dev/test env

rpmout

List RPMs on a system & generate JSON, HTML, LaTeX, and CSV

biomob-portal-planning

Repository where users and developers can create and discuss issues during development

dina-search-api

Search module for AAFC-DINA

auchenorrhyncha-ortholog-baitset

A repository supporting the methodology and distribution of a custom baitset used for insect target enrichment sequencing

back-lite

Lightweight backup automation, logging, and organisation system with support for multiple targets

staphylinidae-ortholog-baitset

Code used to generate Staphylinidae baits for use in BioMob WP2 experiments, along with the bait set itself

reference-data-manager

Manages reference data for bioinformatics analysis.

dina-py

Python access to the DINA API

elateridae-ortholog-baitset

Code used to generate Elateridae baits for use in BioMob WP2 experiments, along with the bait set itself