Biological Informatics CoE @ Agriculture and Agri-Food Canada (@AAFC-BICoE)
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AAFC-BICoE

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Top repositories

1

snakemake-mothur

Example of a snakemake workflow implementation of the mothur MiSEQ SOP
Python
9
star
2

dina-local-deployment

Deployment scripts and files for local deployment of the DINA system
CSS
5
star
3

Galaxy

Galaxy tool wrappers, tool dependencies, and workflows.
Perl
4
star
4

dina-ui

React based user interface for the DINA project / Interface utilisateur basée sur React pour le projet DINA
TypeScript
4
star
5

snakemake-amplicon-metagenomics

Command line bioinformatics workflows, created with Snakemake workflow management tool.
Python
4
star
6

AODP_releases

Releases of Automated Oligo Design Pipeline (AODP): [email protected]
4
star
7

snakemake-partial-genome-pipeline

Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data
Python
3
star
8

matiri

Concurrent mysql backup script with metadata in Sqlite3;
Shell
3
star
9

dina-planning

AAFC-DINA planning repository
3
star
10

dina-base-api

Base DINA API package for Java built on SpringBoot
Java
2
star
11

MBB-Bio-Roll

Extended bioinformatics roll for the Rocks cluster
Perl
2
star
12

seqdb-api

Services for managing laboratory workflows and DNA sequence tracking / Services permettant la gestion de donnée de laboratoire et le suivi de séquences d’ADN.
Java
2
star
13

natural-history-collection-api

AAFC DINA Collection module implementation / Implémentation du module de Collection DINA de AAC
Java
2
star
14

snakemake-trimmomatic

Example of a snakemake encapsulation of trimmomatic
Python
2
star
15

snakemake-barcoding-assembly-pipeline

Snakemake Pipeline for processing COI sequencing data
Python
1
star
16

xlsx2redmine

Import a task list in XLSX format into redmine
Python
1
star
17

puppet-manifests

Repository housing puppet manifests developped by MBB at AAFC
Puppet
1
star
18

MBB-Bio-Roll-Docker

Docker files for bioinformatics & related tools
1
star
19

dockerfiles

Repository housing Dockerfiles created by MBB at AAFC
1
star
20

dina-db-init-container

init-container used to manage DINA databases for dev/test env
Shell
1
star
21

rpmout

List RPMs on a system & generate JSON, HTML, LaTeX, and CSV
Go
1
star
22

biomob-portal-planning

Repository where users and developers can create and discuss issues during development
1
star
23

dina-search-api

Search module for AAFC-DINA
Java
1
star
24

auchenorrhyncha-ortholog-baitset

A repository supporting the methodology and distribution of a custom baitset used for insect target enrichment sequencing
1
star
25

back-lite

Lightweight backup automation, logging, and organisation system with support for multiple targets
Shell
1
star
26

staphylinidae-ortholog-baitset

Code used to generate Staphylinidae baits for use in BioMob WP2 experiments, along with the bait set itself
Python
1
star
27

reference-data-manager

Manages reference data for bioinformatics analysis.
Python
1
star
28

dina-py

Python access to the DINA API
1
star
29

elateridae-ortholog-baitset

Code used to generate Elateridae baits for use in BioMob WP2 experiments, along with the bait set itself
Python
1
star