Explore @tanaylab Open Source projects

@tanaylab

tanaylab

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R
52.5 %

Jupyter Notebook
20.0 %

C++
10.0 %

Python
7.5 %

Perl
5.0 %

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2.5 %

Julia
2.5 %

metacell

Metacell - Single-cell mRNA Analysis

metacells

Metacells - Single-cell RNA Sequencing Analysis

embflow

schic2

tgstat

Fast and efficient statistical tools from the Tanay lab

MCView

A shiny app for metacell analysis

tglkmeans

Efficient Implementation of Kmeans++ Algorithm

li_et_al_cell_2018_melanoma_scrna

tgutil

Tanay group collection of simple utility functions

metabric_rrbs

Jupyter Notebook

shaman

The shaman package - sampling HiC contact matrices for a-parametric normalization

misha

Genomic data analysis suite

labNorm

Normalize Laboratory Measurements by Age and Gender

daf

Data in Axes in Formats

EmbExe

EXE development paper analysis code

Jupyter Notebook

rabembflow

Jupyter Notebook

naryn

Native Access medical record Retriever for high Yield aNalytics

IIAS2023

Jupyter Notebook

metacells-vignettes

Vignettes for the Python metacells package

Jupyter Notebook

Mendelson_et_al_2023

Jupyter Notebook

scHiC_embryo

metacell.flow

Supporting inference of differentiation flow over metacell manifolds (and innovation of additional scRNA buzzwords)

MARS-SEQ

MARS-SEQ pipeline (scrna module from tlsrc)

slanter

Slanted Matrices and Ordered Clustering

repsc

methylayer

Tumor Expression-Methylation Layerd Analysis

Meir_et_al_nat_gen_2020_clonemem

Luria-Delbruck design, comparing transcriptome, methylome and exome of single-cells to hundreds of single-cell-derived clones

mldpEHR

Markovian Lifelong Mortality and Disease Predisposition models for electronic health records.

hematopoiesis2018

gpatterns

umi4cpackage

NestedTests.jl

Run tests in nested evironments.

tet-gastrulation

TET gastrulation paper analysis code

Jupyter Notebook

Dnmt3ab_MEEB

Jupyter Notebook

tgconfig

The goal of tgconfig is to provide infrastructure for managing package parameters, (inspired by https://github.com/r-lib/pkgconfig)

repguide

tanaylab.github.io

tgppt

Tanay Group Powerpoint Utils

Gmara

Genes Manifests Archive for RNA Analysis

BarboyBercovich

Pipeline and analysis of CD8+ Tcells timed response to immunotherapy in mouse models