• Stars
    star
    1
  • Language
    Python
  • License
    MIT License
  • Created 6 months ago
  • Updated 3 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Genes Manifests Archive for RNA Analysis

More Repositories

1

metacell

Metacell - Single-cell mRNA Analysis
R
105
star
2

metacells

Metacells - Single-cell RNA Sequencing Analysis
Python
92
star
3

embflow

R
12
star
4

schic2

R
8
star
5

tgstat

Fast and efficient statistical tools from the Tanay lab
C++
8
star
6

MCView

A shiny app for metacell analysis
R
8
star
7

tglkmeans

Efficient Implementation of Kmeans++ Algorithm
C++
7
star
8

li_et_al_cell_2018_melanoma_scrna

R
5
star
9

tgutil

Tanay group collection of simple utility functions
R
5
star
10

metabric_rrbs

Jupyter Notebook
5
star
11

shaman

The shaman package - sampling HiC contact matrices for a-parametric normalization
R
5
star
12

misha

Genomic data analysis suite
C++
4
star
13

labNorm

Normalize Laboratory Measurements by Age and Gender
R
4
star
14

daf

Data in Axes in Formats
Python
4
star
15

EmbExe

EXE development paper analysis code
Jupyter Notebook
3
star
16

rabembflow

Jupyter Notebook
3
star
17

naryn

Native Access medical record Retriever for high Yield aNalytics
C++
3
star
18

IIAS2023

Jupyter Notebook
3
star
19

metacells-vignettes

Vignettes for the Python metacells package
Jupyter Notebook
3
star
20

Mendelson_et_al_2023

Jupyter Notebook
2
star
21

scHiC_embryo

R
2
star
22

metacell.flow

Supporting inference of differentiation flow over metacell manifolds (and innovation of additional scRNA buzzwords)
R
2
star
23

MARS-SEQ

MARS-SEQ pipeline (scrna module from tlsrc)
Perl
2
star
24

slanter

Slanted Matrices and Ordered Clustering
R
2
star
25

repsc

R
2
star
26

methylayer

Tumor Expression-Methylation Layerd Analysis
R
2
star
27

Meir_et_al_nat_gen_2020_clonemem

Luria-Delbruck design, comparing transcriptome, methylome and exome of single-cells to hundreds of single-cell-derived clones
R
2
star
28

mldpEHR

Markovian Lifelong Mortality and Disease Predisposition models for electronic health records.
R
1
star
29

hematopoiesis2018

R
1
star
30

gpatterns

R
1
star
31

umi4cpackage

Perl
1
star
32

NestedTests.jl

Run tests in nested evironments.
Julia
1
star
33

tet-gastrulation

TET gastrulation paper analysis code
Jupyter Notebook
1
star
34

Dnmt3ab_MEEB

Jupyter Notebook
1
star
35

tgconfig

The goal of tgconfig is to provide infrastructure for managing package parameters, (inspired by https://github.com/r-lib/pkgconfig)
R
1
star
36

repguide

R
1
star
37

tanaylab.github.io

HTML
1
star
38

tgppt

Tanay Group Powerpoint Utils
R
1
star
39

BarboyBercovich

Pipeline and analysis of CD8+ Tcells timed response to immunotherapy in mouse models
R
1
star