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JugLab (@juglab)

juglab

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n2v

This is the implementation of Noise2Void training.

EmbedSeg

Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

FourierImageTransformer

Fourier Image Transformer (FIT) can solve relevant image analysis tasks in Fourier space.

pn2v

This is our implementation of Probabilistic Noise2Void

DenoiSeg

Joint training of denoising and segmentation.

Jupyter Notebook

PPN2V

Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"

DivNoising

DivNoising is an unsupervised denoising method to generate diverse denoised samples for any noisy input image. This repository contains the code to reproduce the results reported in the paper https://openreview.net/pdf?id=agHLCOBM5jP

HDN

This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets

labkit-ui

Advanced Tool for Labeling And Segmentation

cryoCARE_pip

PIP package of cryoCARE

cryoCARE_T2T

Singularity image for cryo-CARE

Jupyter Notebook

napari-n2v

A self-supervised denoising algorithm.

N2V_fiji

Jupyter Notebook

VoidSeg

Notebooks for VoidSeg

DecoNoising

Jupyter Notebook

EmbedSeg-napari

Extending EmbedSeg for use in napari

uSplit

napari-denoiseg

labkit-pixel-classification

LabelEditor

PlatyMatch

Accepted at BioImage Computing Workshop in ECCV, 2020

featureforest

A napari plugin for segmentation using vision transformers' features

labkit-command-line

Labkit Command Line - Segment huge images on a cluster

clusterify

Port your projects to be cluster-ready!

DL_TensorFlow_PyTorch

Jupyter Notebook

DenoiSeg_fiji

VoidSeg_cluster

Jupyter Notebook

tiny-uploader-tool_fiji

Tiny Uploader Tool (TUT) for Fiji

MultiOmicsCellSim

Cell Simulator to map parametrical distributions into various modalities

Jupyter Notebook

imagej-logo

MicroSSIM

Range Invariant SSIM

Jupyter Notebook

fiji-howto

How to do things in Fiji from Java

labkit-remote-drawing

PyTr2d

Python based Tracking in 2D

napari-patchcreator

Zebrafish_nuclear_volume_analysis

Hosts the code for the segmentation and quantitative results presented in Vignes et al. (2021, bioRxiv).

denoiSplit

Jupyter Notebook

Noise2Noise-with-CSBDeep

Denoising of Scanning Electron Microscopy (SEM) Data with CSBDeep and Noise2Noise.

Jupyter Notebook

IMPRS-programming-course

AI4LifeSubmissions

Jupyter Notebook