• Stars
    star
    26
  • Rank 930,752 (Top 19 %)
  • Language
    Jupyter Notebook
  • License
    BSD 2-Clause "Sim...
  • Created over 5 years ago
  • Updated almost 3 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Singularity image for cryo-CARE

More Repositories

1

n2v

This is the implementation of Noise2Void training.
Python
396
star
2

EmbedSeg

Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
Python
111
star
3

FourierImageTransformer

Fourier Image Transformer (FIT) can solve relevant image analysis tasks in Fourier space.
Python
94
star
4

pn2v

This is our implementation of Probabilistic Noise2Void
Python
71
star
5

DenoiSeg

Joint training of denoising and segmentation.
Jupyter Notebook
65
star
6

PPN2V

Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"
Python
54
star
7

DivNoising

DivNoising is an unsupervised denoising method to generate diverse denoised samples for any noisy input image. This repository contains the code to reproduce the results reported in the paper https://openreview.net/pdf?id=agHLCOBM5jP
Python
42
star
8

HDN

This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets
Python
35
star
9

labkit-ui

Advanced Tool for Labeling And Segmentation
Java
33
star
10

cryoCARE_pip

PIP package of cryoCARE
Python
26
star
11

napari-n2v

A self-supervised denoising algorithm.
Python
24
star
12

N2V_fiji

Jupyter Notebook
21
star
13

VoidSeg

Notebooks for VoidSeg
Python
16
star
14

DecoNoising

Jupyter Notebook
10
star
15

EmbedSeg-napari

Extending EmbedSeg for use in napari
Python
8
star
16

uSplit

Python
6
star
17

napari-denoiseg

Python
6
star
18

labkit-pixel-classification

Java
6
star
19

LabelEditor

Java
4
star
20

PlatyMatch

Accepted at BioImage Computing Workshop in ECCV, 2020
Python
4
star
21

featureforest

A napari plugin for segmentation using vision transformers' features
Python
4
star
22

labkit-command-line

Labkit Command Line - Segment huge images on a cluster
Java
3
star
23

clusterify

Port your projects to be cluster-ready!
Python
2
star
24

DL_TensorFlow_PyTorch

Jupyter Notebook
2
star
25

DenoiSeg_fiji

Java
2
star
26

VoidSeg_cluster

Jupyter Notebook
2
star
27

tiny-uploader-tool_fiji

Tiny Uploader Tool (TUT) for Fiji
Java
2
star
28

MultiOmicsCellSim

Cell Simulator to map parametrical distributions into various modalities
Jupyter Notebook
1
star
29

imagej-logo

1
star
30

MicroSSIM

Range Invariant SSIM
Jupyter Notebook
1
star
31

fiji-howto

How to do things in Fiji from Java
Java
1
star
32

labkit-remote-drawing

JavaScript
1
star
33

PyTr2d

Python based Tracking in 2D
Python
1
star
34

napari-patchcreator

Python
1
star
35

Zebrafish_nuclear_volume_analysis

Hosts the code for the segmentation and quantitative results presented in Vignes et al. (2021, bioRxiv).
Python
1
star
36

denoiSplit

Jupyter Notebook
1
star
37

Noise2Noise-with-CSBDeep

Denoising of Scanning Electron Microscopy (SEM) Data with CSBDeep and Noise2Noise.
Jupyter Notebook
1
star
38

IMPRS-programming-course

Python
1
star
39

AI4LifeSubmissions

Jupyter Notebook
1
star