Explore @XSLiuLab Open Source projects

LiuXSLab (@XSLiuLab)

XSLiuLab

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Registered about 7 years ago
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Location 🇨🇳 China
Country Total Rank 48,350
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Workshop

课题组每周研讨会

tumor-immunogenicity-score

TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

Seq2Neo

Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction

XSLab-docs

上科大刘雪松课题组基因组学分析传承与分享知识库

PC_CNA_signature

Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/

Immunoediting

Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution

XSLiuLab.github.io

课题组网站

TLimmuno2

TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning

Noncoding-code-2020

CDC20 noncoding project

ecDNA_immune

Extrachromosomal DNA is associated with decreased immune cell infiltration and antigen presentation, represents a potential cancer immune evasion mechanism

Beacon

Beacon (灯塔) of liulab

TCfinder

Pan-cancer_CNA_signature

https://xsliulab.github.io/Pan-cancer_CNA_signature/

neoantigen_depletion

neoantigen depletion checking and detection

BioForum2019-TIGS-poster

A poster showing TIGS project at BioForum2019, ShanghaiTech University

ICI-impaired-by-Sex

MethyDeep

Neodb

Shiny Web Server and Database for Neoantigen discovery

Jupyter Notebook

LiuLab-Rotation-2018

DOC for rotation student in Xuesong-Liu lab

InterpretationAnalysisHRDCNA

An interpretation analysis of copy number alteration features in pan-cancer homologous recombination deficiency prediction and biology

HRDCNA

A robust homologous recombination deficiency predictor based on copy number alteration features

CNV_Calling_Pipeline

ABSOLUTE Copy Number Calling Pipeline for Raw Sequencing Data

neoantigen_validation

hypoxia_target

Deep learning reveals the metabolic vulnerability of hypoxic tumor cells and the critical function of FLAD1 mediated tumor hypoxia adaption

Jupyter Notebook

Pep2TCR

Pep2TCR: a novel deep learning method for CD4 TCR specificity prediction

Immunoediting_response_letter_CR

DeepMeta

Precise metabolic dependencies of cancer through deep learning

Jupyter Notebook

CDC20

PromoterMutSpot

ggct

FoLST2021-PancancerCNAsig-Poster

A poster showing Pancancer CNA signature project at FoLST2021, ShanghaiTech University.https://xsliulab.github.io/FoLST2021-PancancerCNAsig-Poster/