Edinburgh Genome Foundry (@Edinburgh-Genome-Foundry)
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Top repositories

1

DnaFeaturesViewer

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
Python
491
star
2

pdf_reports

📕 Python library and CSS theme to generate PDF reports from HTML/Pug
Python
190
star
3

DnaChisel

✏️ A versatile DNA sequence optimizer
Python
176
star
4

Flametree

🔥 Python file and zip operations made easy
Python
147
star
5

Taskpacker

🎒 Simple schedule optimization library for Python
Python
135
star
6

blabel

🏷️ Python label/sticker PDF generation. HTML templates, built-in barcodes, qr codes, and other goodies
Python
135
star
7

Proglog

📝 Logs and progress bars manager for Python
Python
93
star
8

lala

🌎 Analyze and generate reports of web logs (NGINX)
Python
60
star
9

DnaCauldron

⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Python
44
star
10

sequenticon

👾 Generate identicons for DNA sequences with Python
Python
36
star
11

Plateo

🤖 Python biolab automation library: parsers, reports generators, picklists simulators, and more
Python
35
star
12

Primavera

🌸 Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
Python
32
star
13

codon-usage-tables

📊 Codon usage tables in code-friendly format + Python bindings
Python
31
star
14

Geneblocks

💠 Find common blocks and differences between DNA sequences
Python
28
star
15

crazydoc

Read DNA sequences from colourful Microsoft Word documents
Python
24
star
16

DnaWeaver

A route planner for DNA assembly
Python
22
star
17

Caravagene

🎨 Python library to plot multi-part genetic constructs
Python
21
star
18

genome_collector

🌠 Easily download genomes and build BLAST/Bowtie indexes in Python
Python
20
star
19

CAB

🚖 The friendly Computational App Boilerplate. Django + Vue.JS + Redis queues + NginX
Vue
20
star
20

CUBA

🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software
Vue
19
star
21

BandWagon

🎺 Plot DNA digestion band patterns with Python
Python
17
star
22

BandWitch

💫 Computer-aided DNA assembly validation and identification from restriction digests.
Python
15
star
23

SBOL-Visual-CSS

➰ Draw genetic elements with HTML & CSS
HTML
15
star
24

genedom

Batch domestication of genetic parts with Python
Python
13
star
25

bioprinter

🖨️ Print pictures with living micro-organisms !
Python
12
star
26

Minotaor

An amino acid sequence annotator
Python
11
star
27

Sequeduct

Sequencing analysis pipeline
Nextflow
10
star
28

tatapov

🐾 DNA overhang misannealing data for Python
Python
9
star
29

GoldenHinges

🔗 Short overhangs design for DNA assembly
Python
9
star
30

kappagate

🔮 Predict DNA assembly clone validity rates - powered by Kappa
Python
8
star
31

dab

👉 EGF Design and Build, the Foundry's DNA design ordering portal
Vue
8
star
32

zymp

✂️ Design compact restriction sites arrays (python utility)
Python
8
star
33

egf-shared-documents

📚 Shared slideshows, courses, etc. from the EGF
HTML
7
star
34

icebreaker

❄️ Python API for the JBEI-ICE sample manager
Python
6
star
35

easy_dna

🎒 Python library to read, write, edit DNA sequences
Python
6
star
36

Examples

Collection of Python modules and Jupyter notebook examples
HTML
5
star
37

topkappy

🌔 Pythonic bindings for the Kappa model simulation language
Python
5
star
38

HowTo

📒 Short opinionated recipes, mostly for us.
Python
4
star
39

crecombio

A simple Cre, Flp and other site-specific recombination simulator
Python
4
star
40

genedeals

Data on different commercial offers for gene-sized DNA
4
star
41

igem-registry-downloader

Download the full iGEM database of parts
Python
3
star
42

saboteurs

💣 Identify elements impairing success accross group experiments.
Python
3
star
43

Ediacara

Python package for interpreting sequencing data of assembled DNA constructs (plasmids)
Python
3
star
44

DnaWeaver-online

A web app for DNA Weaver
Vue
2
star
45

trellab

Thin layer on top of pytrello for automating Trello organization-based tasks
Python
2
star
46

Polymera

Polymera is a Python package for representing ambiguous sequences written with complement alphabets.
Python
2
star
47

OT2Metclo

MSc project
Python
2
star
48

GeneAlloy

Python
2
star
49

Edinburgh-Genome-Foundry.github.io

📚 The EGF Software Website
HTML
1
star
50

tatapov_data

Data for the EGF Tatapov package
1
star
51

egf-codons-website

📚 Sources of the EGF Codons website, written with Vue.js
Vue
1
star
52

Overhang

Compendium of overhangs
Python
1
star
53

Plasmid_assessor

Plasmid assessment for Golden Gate cloning
Python
1
star
54

ImagesAnnotator

Simple web app to annotate images by hand - built with Vue.js
JavaScript
1
star
55

EGF_Docker_Jupyter

Docker Jupyter images with (almost) all EGF packages
Dockerfile
1
star