DeepMicroscopy - Generating Deep Insights from Deep Learning in Microscopy (@DeepMicroscopy)
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Top repositories

1

SlideRunner

SlideRunner is a tool for massive cell annotations in whole slide images
Python
75
star
2

Exact

An open source online platform for collaborative image labeling of almost everything
JavaScript
55
star
3

MITOS_WSI_CCMCT

Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images
Jupyter Notebook
28
star
4

MITOS_WSI_CMC

Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images
Jupyter Notebook
21
star
5

MIDOG

MItosis DOmain Generalization Challenge 2021/2022
Python
15
star
6

TUPAC16_AlternativeLabels

Alternative training set for the TUPAC16 auxiliary mitotic figure data set
Jupyter Notebook
12
star
7

MIDOGpp

A large, multi-domain mitotic Figure Dataset
Python
10
star
8

MIDOG_reference_docker

Reference implementation of domain-adversarial training on a RetinaNet (to use as template in the MIDOG challenge)
Python
8
star
9

CanineCutaneousTumors

Jupyter Notebook
7
star
10

Cox_AMIL

Code for our BVM workshop submission "Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays"
Jupyter Notebook
7
star
11

MultiScanner_SCC

Python
6
star
12

AdaptiveRegionSelection

Python
6
star
13

CrossScannerRegistration

Python
3
star
14

QuiltCleaner

Automatic cleaning of the QUILT-1M pathology dataset
Jupyter Notebook
3
star
15

Results-Exact-Study

Jupyter Notebook
2
star
16

CCMCT_Bi_Multinucleated

Detection of Bi- and Multinucleated Cells in Histology Images of Canine Cutaneous Mast Cell Tumor
Jupyter Notebook
1
star
17

HierarchicalFCOS

Automatic Subtyping for Atypical and Typical Mitosis using a Hierarchical Anchor-Free Object Detector
Jupyter Notebook
1
star
18

VisualRepresentationSurvey

Jupyter Notebook
1
star
19

EXACT-QueueRunner

Repository for EXACT QueueRunner, a service that executes processing for jobs available on EXACT.
Python
1
star