DeepMicroscopy/SlideRunner

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Python
License
GNU General Publi...
Created almost 7 years ago
Updated about 1 year ago

DeepMicroscopy/SlideRunner

DeepMicroscopy

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SlideRunner is a tool for massive cell annotations in whole slide images

Exact

An open source online platform for collaborative image labeling of almost everything

MITOS_WSI_CCMCT

Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

Jupyter Notebook

MITOS_WSI_CMC

Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images

Jupyter Notebook

MIDOG

MItosis DOmain Generalization Challenge 2021/2022

TUPAC16_AlternativeLabels

Alternative training set for the TUPAC16 auxiliary mitotic figure data set

Jupyter Notebook

MIDOGpp

A large, multi-domain mitotic Figure Dataset

MIDOG_reference_docker

Reference implementation of domain-adversarial training on a RetinaNet (to use as template in the MIDOG challenge)

CanineCutaneousTumors

Jupyter Notebook

Cox_AMIL

Code for our BVM workshop submission "Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays"

Jupyter Notebook

MultiScanner_SCC

AdaptiveRegionSelection

CrossScannerRegistration

QuiltCleaner

Automatic cleaning of the QUILT-1M pathology dataset

Jupyter Notebook

Results-Exact-Study

Jupyter Notebook

CCMCT_Bi_Multinucleated

Detection of Bi- and Multinucleated Cells in Histology Images of Canine Cutaneous Mast Cell Tumor

Jupyter Notebook

HierarchicalFCOS

Automatic Subtyping for Atypical and Typical Mitosis using a Hierarchical Anchor-Free Object Detector

Jupyter Notebook

VisualRepresentationSurvey

Jupyter Notebook

EXACT-QueueRunner

Repository for EXACT QueueRunner, a service that executes processing for jobs available on EXACT.