Deep Medical Imaging Lab (PI Reuter) (@Deep-MI)
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Deep-MI

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Top repositories

1

FastSurfer

PyTorch implementation of FastSurferCNN
Jupyter Notebook
459
star
2

LaPy

Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)
Python
60
star
3

fsqc

A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
Python
56
star
4

FatSegNet

Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI
Python
22
star
5

BrainPrint-legacy

Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
Python
20
star
6

BrainPrint

A python-only derivative of the original BrainPrint scripts
Python
11
star
7

olf-bulb-segmentation

Automated Olfactory Bulb Segmentation Pipeline for T2-Weighted MRI
Jupyter Notebook
7
star
8

fslmer

Univariate and mass-univariate linear mixed-effects analysis for FreeSurfer imaging data.
R
5
star
9

DISCUS

The repository contains code for the Geometric Deep Learning for Diffusion MRI Signal Reconstruction with Continuous Samplings (DISCUS) project
Python
4
star
10

3d-neuro-seg

Repository to our 3d neuro-anatomic segmentation method submitted to the MIDL 2022 conference
Python
3
star
11

hipsta

HIPSTA - a python package for hippocampal shape and thickness analysis
Python
3
star
12

Deep-MI.github.io

Deep Medical Imaging Lab Webpage
TeX
2
star
13

head-motion-from-MRI

Code for the paper "Estimating Head Motion from MRI", which predicts motion scores directly from MRI images.
Python
2
star