@Clinical-Genomics-Lund
Guthub

Clinical-Genomics-Lund

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  • Stars
    star
    32
  • Global Org. Rank 97,088 (Top 31 %)
  • Registered about 6 years ago
  • Most used languages
    Perl
         70.0 %
    HTML
         10.0 %
    JavaScript
         10.0 %
    Python
         10.0 %
  • Location πŸ‡ΈπŸ‡ͺ Sweden
  • Country Total Rank 279,670
  • Country Ranking
    Perl
         36
    HTML
         590
    JavaScript
         1,288
    Python
         4,129

Top repositories

1

gens

JavaScript
12
star
2

nextflow_wgs

Perl
5
star
3

bonsai

Visualize and analyze resistance and outbreak of bacterial pathogen
HTML
4
star
4

TMB-Calc

Calculates TMB in tumor samples from VCFs
Perl
3
star
5

nextflow_tumwgs

Perl
2
star
6

nextflow_microwgs

Perl
2
star
7

cll_genie

1
star
8

run_rtg

Simple script to facilitate evaluation of GIAB using RTG
Perl
1
star
9

nextflow_myeloid

Nextflow pipeline for analysis of the twist myeloid panel
Perl
1
star
10

PGxModule

PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.
Python
1
star
11

nextflow_rnaseqfus

Fusion genes identification pipeline
Perl
1
star