< C++

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Awesome C++ Biology

• canu 600

  

  | updated 7 months ago

  A single molecule sequence assembler for genomes large and small.

• libsequence 49

  

  | updated almost 4 years ago | GNU General Publi...

  libsequence: a C++ class library for evolutionary genetic analysis

• Mash 355

  

  | updated 6 months ago | Other

  Fast genome and metagenome distance estimation using MinHash

• salmon 718

  

  | updated about 2 months ago | GNU General Publi...

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

• sdsl-lite 2,173

  

  | updated 11 months ago | Other

  Succinct Data Structure Library 2.0

• seqan 454

  

  | updated 21 days ago | Other

  SeqAn's official repository.

• seqan3 388

  

  | updated about 2 months ago | Other

  The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

• vcflib 593

  

  | updated about 1 month ago | MIT License

  C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

• wham 99

  

  | updated about 1 year ago | Other

  Structural variant detection and association testing