Discover @sigven Open Source projects

Sigve Nakken (@sigven)

sigven

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Registered over 12 years ago
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R
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Location 🇳🇴 Norway
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pcgr

Personal Cancer Genome Reporter (PCGR)

cpsr

Cancer Predisposition Sequencing Reporter (CPSR)

gvanno

Generic human DNA variant annotation pipeline

oncoEnrichR

Explore the cancer relevance of your gene list

vcf2tsvpy

Genomic VCF to tab-separated values

pharmOncoX

Targeted and non-targeted anticancer drugs and drug regimens

cacao

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

phenOncoX

Crossmapped phenotype ontologies for the oncology domain

geneOncoX

Human gene annotations for the oncology domain

cancerHotspots

R data package with mutational hotspots in cancer

sv_anno

Processing and annotation of somatic structural variants

plsd

Prospective Lynch Syndrome Database (PLSD) - cumulative risk for cancer by age, genetic variant, and gender

gwasOncoX

Cancer variant data from genome-wide association studies (GWAS)

sigven.github.io

Minimal personal website

lscarisk

Estimation of cancer risk in Lynch Syndrome carriers (PLSD Shiny web application)

vcfmerge

MuTect2 + Strelka somatic VCF merger

vcfhelpR

Functions to order, write and crossmap VCF/BED records in R

gtexRNA

Gene expression retrieval with GTEx API

epacts-docker

Dockerized version of EPACTS

literatureVault

Biomedical literature reference data for precision cancer medicine