sigven/cpsr sigven/cpsr

  • Stars
    star
    56
  • Rank 530,104 (Top 11 %)
  • Language
    R
  • License
    Other
  • Created over 6 years ago
  • Updated 3 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
sigven/cpsr
github

sigven

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Cancer Predisposition Sequencing Reporter (CPSR)

More Repositories

1

pcgr

Personal Cancer Genome Reporter (PCGR)
R
253
star
2

gvanno

Generic human DNA variant annotation pipeline
Python
53
star
3

oncoEnrichR

Explore the cancer relevance of your gene list
R
49
star
4

vcf2tsvpy

Genomic VCF to tab-separated values
Python
47
star
5

pharmOncoX

Targeted and non-targeted anticancer drugs and drug regimens
R
28
star
6

cacao

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
R
21
star
7

phenOncoX

Crossmapped phenotype ontologies for the oncology domain
R
10
star
8

geneOncoX

Human gene annotations for the oncology domain
R
6
star
9

cancerHotspots

R data package with mutational hotspots in cancer
R
2
star
10

sv_anno

Processing and annotation of somatic structural variants
Python
2
star
11

plsd

Prospective Lynch Syndrome Database (PLSD) - cumulative risk for cancer by age, genetic variant, and gender
R
2
star
12

gwasOncoX

Cancer variant data from genome-wide association studies (GWAS)
R
2
star
13

sigven.github.io

Minimal personal website
HTML
1
star
14

lscarisk

Estimation of cancer risk in Lynch Syndrome carriers (PLSD Shiny web application)
R
1
star
15

vcfmerge

MuTect2 + Strelka somatic VCF merger
Python
1
star
16

vcfhelpR

Functions to order, write and crossmap VCF/BED records in R
R
1
star
17

gtexRNA

Gene expression retrieval with GTEx API
R
1
star
18

epacts-docker

Dockerized version of EPACTS
Dockerfile
1
star
19

literatureVault

Biomedical literature reference data for precision cancer medicine
R
1
star